Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq8536 134 8e-30 seq6118 134 8e-30 seq4931 134 8e-30 seq1970 134 8e-30 seq84 134 8e-30 seq964 131 9e-29 seq10593 123 1e-26 seq2856 122 5e-26 seq2860 118 6e-25 seq631 113 3e-23 seq3112 104 1e-20 seq2569 102 5e-20 seq912 98.7 6e-19 seq9719 96.9 2e-18 seq5739 95.1 7e-18 seq1821 95.1 7e-18 seq1238 93.3 2e-17 seq9040 89.7 3e-16 seq12104 77.0 2e-12 >seq8536 Length=56880 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 41698 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 41639 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 41638 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 41582 >seq6118 Length=43452 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 42811 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 42752 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 42751 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 42695 >seq4931 Length=248149 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 94369 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 94428 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 94429 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 94485 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||||||| ||||| | ||||||| || Sbjct 84093 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGATGGAGTCCTATAAGTAACATCCGCC 84034 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| || ||||||||||| ||||||| Sbjct 84033 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCATCTTCGA 83977 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||||||||||||||||| |||||| ||| ||||| | ||||||| || Sbjct 90894 GAACCTAAAGACTTTGATTTCTCATAAGGTACCGGCGGAGTCCTATAAGTAACATCCGCC 90953 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||||||||| |||| |||||| || ||||||||||||||||||| Sbjct 90954 GATCCCTGGTCGGCATAGTTTATGGTTGAGACTAGGATGGTATCTGATCGTCTTCGA 91010 >seq1970 Length=50579 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 18608 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 18667 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 18668 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 18724 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 47399 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 47458 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 47459 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 47515 >seq84 Length=90702 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||||| || Sbjct 46359 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAATAACATCCGCC 46418 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| | || |||||| |||||||||||||||||||||| Sbjct 46419 GATCCCTGGTCGGCATCGTTTATGATTGAGACTAGGACGGTATCTGATCGTCTTCGA 46475 >seq964 Length=845767 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 516005 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCC 516064 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||| ||||||||||||||||| Sbjct 516065 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGATATCTGATCGTCTTCGA 516121 >seq10593 Length=48225 Score = 123 bits (136), Expect = 1e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||||||| ||||| | | ||||||| | | Sbjct 33605 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTATTAGTAACATCCGCAG 33546 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| |||||| || ||||||||||| Sbjct 33545 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGAACGGTACCTAATCGTCTTCGA 33490 >seq2856 Length=133587 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||| |||||||| |||||||||| ||||| | |||||| || Sbjct 112590 GAACCCAAAGACTTAGATTTCTCATAAGGTGCCGGTGGAGTCCTATAAGTAACATTCGCC 112649 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| || |||||||||||||||| || Sbjct 112650 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCGTCTTTGA 112706 >seq2860 Length=76542 Score = 118 bits (130), Expect = 6e-25 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||||||||||||||||| |||||||||| ||||| | ||||||| | Sbjct 19413 GAACCTAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCTGCT 19472 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||| | |||||||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 19473 GATCCATGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 19527 >seq631 Length=233705 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| |||||||||||||||||| |||||||| | ||||| | ||||||| | Sbjct 9600 GAACGCAAAGACTTTGATTTCTCATAAGGTGCGGGCGGAGTCCTATAAGTAACATCCGTC 9659 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| ||| |||||| ||||||||||||||| |||||| Sbjct 9660 GATCCCTGGTCGGCATCGTTTATCGTTGAGACTAGGACGGTATCTGATCGGCTTCGA 9716 >seq3112 Length=203282 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||| |||||| ||||||||| ||||||| ||| ||||| | ||||||| Sbjct 40312 GAACCCGAAGACTGTGATTTCTCATAAGGTGTCGACAGAGTCCTATAAGTAACATCCGTT 40371 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||| |||| |||| |||| |||||| ||||||||||||||| ||| || Sbjct 40372 GATCCCTAGTCAGCATCTTTTATGGTTGAGACTAGGACGGTATCTGATCGCCTTTGA 40428 >seq2569 Length=124055 Score = 102 bits (112), Expect = 5e-20 Identities = 100/130 (77%), Gaps = 13/130 (10%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATC-GC- 58 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 15411 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGTGGAGTCCTATAAGTAACATCTGCC 15470 Query 59 -----------CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGA 107 ||||||||| |||| ||| ||||| |||| ||| || |||||||||||| Sbjct 15471 GACCAGGTCCGCCGATCCCTGGTCGACATCGTTTATGGTTGAGATTAGGACGGTATCTGA 15530 Query 108 TCGTCTTCGA 117 |||||||||| Sbjct 15531 TCGTCTTCGA 15540 >seq912 Length=840106 Score = 98.7 bits (108), Expect = 6e-19 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||| ||||||||||| ||||||||| | ||||| | ||| ||| ||| Sbjct 346117 AACCCAAAGAATTTGATTTCTCATAAGGTGCCAACAGAGTCCTATAAGTAATATCCGCCG 346176 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| | ||| |||| ||||| |||||||| || || ||||| | ||||||||| Sbjct 346177 ATCCTTGGTCAGCATCGTTTATGGTTAAGATTAGGATGGTATTTAATCGTCTTC 346230 >seq9719 Length=51888 Score = 96.9 bits (106), Expect = 2e-18 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCCC 60 ||| |||||||||||||||||| ||||||| | ||| ||||| | ||||||| || Sbjct 51665 AACTCAAAGACTTTGATTTCTCATAAGGTG-CTAGCGGAGTCTTATAAGTAACATCTGCC 51723 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||||| ||| |||| |||| |||| ||||| || |||||||||| |||||| Sbjct 51724 GATCCCTGGTCAGCATCATTTATGGTTGGGACTAGGATGGTATCTGATTGTCTTC 51778 >seq5739 Length=107719 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||| |||||||||||||| |||||||| | || || | |||||| || Sbjct 56641 GAACCCAGTGACTTTGATTTCTCATAAGGTGCTGGCAGAATCCTATAAGTAACATTCGCC 56582 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| |||| |||| |||| |||||| |||||||||||||| ||||||| Sbjct 56581 AATCCTTAGTCAGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 56525 >seq1821 Length=335531 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| |||| ||||||||||||| ||||||||| | ||||| | |||| || || Sbjct 10369 GAACTCAAAAACTTTGATTTCTCATAAGGTGCCAACAGAGTCCTATAAGTAACTTCCGCC 10428 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||||||| ||||| | || |||||| || ||||||||||||||| || Sbjct 10429 GATCCTTGATCGGCATCGTTTATGATTGAGACTAGGATAGTATCTGATCGTCTTTGA 10485 >seq1238 Length=97748 Score = 93.3 bits (102), Expect = 2e-17 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCCCGATCCCTAG 69 ||||||||||||| |||||||||| |||| ||| | |||||||| | ||||||| | Sbjct 11361 ACTTTGATTTCTCATAAGGTGCCG-GCGAAGTCTTATAAATAACATCCACTGATCCCTGG 11303 Query 70 TCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||||| |||| ||||| | |||||||||||||||| || Sbjct 11302 TCGGCGTCGTTTATGGTTGAGACTGGAATGGTATCTGATCGTCTTTGA 11255 >seq9040 Length=131819 Score = 89.7 bits (98), Expect = 3e-16 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCCGATCCCTAG 69 ||||||||||||| |||||||||| ||| |||| | ||| |||| | ||||||| | Sbjct 59638 ACTTTGATTTCTCATAAGGTGCCG-GCGAAGTCTTATAAATAGCATCTACTGATCCCTGG 59696 Query 70 TCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||||| | || ||||| | ||||||||||| ||||||| Sbjct 59697 TCGGCATCGTTTATGATTGAGACTGGAATGGTATCTGATCTTCTTCGA 59744 >seq12104 Length=5745 Score = 77.0 bits (84), Expect = 2e-12 Identities = 90/120 (75%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| ||||| || | | Sbjct 4475 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGTAAATGTTA-CTCAG 4533 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 4534 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 4593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278295192840