Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq5932 221 3e-55 seq113 192 2e-46 seq4059 116 1e-23 seq4070 91.5 4e-16 >seq5932 Length=82879 Score = 221 bits (244), Expect = 3e-55 Identities = 295/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| |||||||||||| ||||||||| ||| ||| Sbjct 66588 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGC 66529 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 66528 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 66469 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 66468 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 66409 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 66408 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 66349 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||| || | Sbjct 66348 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAAAGACGAAAGCTAGGGGAGTGAATGG 66289 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| || || | | | Sbjct 66288 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGTGTCGA 66229 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || |||||||| |||| |||| || |||||||| ||| Sbjct 66228 CCCGTGTAGTGCTGTAGCTAATGCGTTAAGTATCCCACCTGGGGAGTAC 66180 >seq113 Length=48730 Score = 192 bits (212), Expect = 2e-46 Identities = 245/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| ||||| |||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 6742 GAGGAAGAAGCCCCGGCGAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 6683 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 6682 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 6626 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 6625 AAGTCGC---CAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 6569 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 6568 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 6509 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 6508 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 6449 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 6448 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 6415 >seq4059 Length=8273 Score = 116 bits (128), Expect = 1e-23 Identities = 212/307 (69%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 33 TGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAG 92 ||| ||||||| |||||||| ||| | ||||| ||| |||| | | || ||||| Sbjct 2256 TGCTAGCAGCCACGGTAATATAGAGGATACAAGCATTATCTAGAATGATTAGGTATAAAG 2315 Query 93 CGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCA 152 | | | ||| || | | |||| | | | | ||||||| |||| |||| ||| ||| Sbjct 2316 CATTTGTAGGTGGCTTTTTAAGTCTGCTATCAAATCCCAAGGCTCAACCCTGGACAAGCA 2375 Query 153 TTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAA--TTCCACGTGTAGCAGTG 210 | | ||| | || |||| | || ||| | |||| ||||| || ||| ||| Sbjct 2376 ATGGAAACTACCAAGCTGGAGTACGGTAG-GGGCAGAGGAAATTTCCAA-TGGAGCGGTG 2433 Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| |||||| || | | |||||||||||| ||| ||| |||| |||||| | Sbjct 2434 AAATACGTAGAGATCAGAAAGAACACCAATGGTGAAAGCACTTTGTTGGGCCAACACTAA 2493 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | ||||||| |||||||||| ||||||||||||| ||||||| ||| | Sbjct 2494 CACTAAGAGACGAAAGTTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCCGT 2553 Query 331 AAACGAT 337 |||| || Sbjct 2554 AAACAAT 2560 >seq4070 Length=443632 Score = 91.5 bits (100), Expect = 4e-16 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 194 TTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCC 253 ||||| ||| ||| |||||||| ||||| || | ||||||||| ||| | ||| | Sbjct 366633 TTCCA-GTGGAGCGGTGAAATGTGTAGAGATCAAAAAGAACACCAACGGCTTAAGCACTC 366575 Query 254 CCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACC 313 ||||| |||||||| | | |||||||| |||||| || |||||||||||| Sbjct 366574 TGCTGGGCCGACACTGACATTGAGAGACGAAAGCTAGGGGAGTGAATGGGATTAGATACC 366515 Query 314 CTGGTAGTCCACGCCCTAAACGATATCAACTAGTT 348 | ||||||| ||| |||||||| | ||||||| Sbjct 366514 CCAGTAGTCCTAGCCATAAACGATCTTGACTAGTT 366480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289082148224