Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1768 152 7e-35 seq5567 143 4e-32 seq5932 136 5e-30 seq8356 116 5e-24 seq7030 105 9e-21 seq23538 93.3 6e-17 seq455 87.8 2e-15 seq15296 82.4 1e-13 seq8528 82.4 1e-13 seq4903 77.0 5e-12 >seq1768 Length=251763 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 246027 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 246085 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 246086 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 246143 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 246144 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 246194 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 246195 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 246254 Query 246 GTA 248 ||| Sbjct 246255 GTA 246257 Score = 143 bits (158), Expect = 4e-32 Identities = 178/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||| | ||||| | ||||||||| ||||| ||| ||| | || Sbjct 249414 CCTTCCAGCACCGGGCATGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 249472 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 249473 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 249530 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | | |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 249531 TAGGGGA---------GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 249581 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 249582 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 249641 Query 246 GTA 248 ||| Sbjct 249642 GTA 249644 >seq5567 Length=223943 Score = 143 bits (158), Expect = 4e-32 Identities = 179/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 171143 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 171201 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 171202 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 171259 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| |||||||| || ||||||||||| ||||| Sbjct 171260 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACGAGGTCATTTTGCCGAGTTCCT 171310 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 171311 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 171370 Query 246 GTA 248 ||| Sbjct 171371 GTA 171373 >seq5932 Length=82879 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||| |||| Sbjct 61258 CCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACC 61316 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 61317 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACCCCCT------------- 61363 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 61364 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 61417 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || ||| ||||||||||||| |||||||||| ||||| | Sbjct 61418 TAGAGAGAGTTGTCTCGCGGCCCTAGGTATTCTCTACCTACCCACCTGTGTTGGTTTCGG 61477 Query 246 GTA 248 ||| Sbjct 61478 GTA 61480 >seq8356 Length=76960 Score = 116 bits (128), Expect = 5e-24 Identities = 173/243 (71%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| |||| | ||||||| | ||||| | || ||| | | Sbjct 31594 CCTTCCAGCACCGGGCAGGTGTCAAACTCTATACATTGTGTTACCAT-TTAGCAGAGTCT 31536 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| ||||||||| | ||| || | | ||| | | | |||| | Sbjct 31535 TGTGTTTTTAATAAACAGTCATTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 31478 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||| ||| |||||| || ||||||||||| ||||| Sbjct 31477 T--------AGGAGAG-CACCCCTTCTCTCGATGTTACGAGGTCATTTTGCCGAGTTCCT 31427 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||| |||||||||| | Sbjct 31426 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTATGTCGGTTTAGG 31367 Query 246 GTA 248 ||| Sbjct 31366 GTA 31364 >seq7030 Length=224382 Score = 105 bits (116), Expect = 9e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| ||||| |||||||||| ||||||| | |||| | Sbjct 47002 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 47061 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 47062 TGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCAGGTA 47109 >seq23538 Length=807 Score = 93.3 bits (102), Expect = 6e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||| |||||||||||| |||||||||| ||||||| | | || | | Sbjct 516 GCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGATTTGTCTC 575 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 || ||| |||||||||||| |||||||||||||| Sbjct 576 ACACCCCTAGTTATTCTCTACCTACCCACCTGTGTCGGT 614 >seq455 Length=74106 Score = 87.8 bits (96), Expect = 2e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||| | ||||||| | |||| | Sbjct 3547 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCTTAGAGAGAGTTGTCT 3488 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 || | || ||||||||||||| ||||||| Sbjct 3487 CGCGCCCCCAGGTATTCTCTACCTATCCACCTG 3455 >seq15296 Length=620 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||||| |||| |||||||||||||| | ||||||||||| |||||||| | ||| | Sbjct 414 TGGCACACCTTATCCCGAAGTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTTAGC 473 Query 200 CCGAACGCCTTAGTATTCTCTAC 222 | |||||||| |||| |||||| Sbjct 474 TCAAACGCCTTCGTATACTCTAC 496 >seq8528 Length=37810 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| |||| |||| ||||| ||||||| | || | | Sbjct 30122 GGCACCCCTTCTCCCGAAGTTATAGGGCTATTTGGCCGAGTTCCTTAGAGAGAGCTATCT 30063 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||||||| |||| |||| Sbjct 30062 CACGCCCCTAGGTATTCTCTACCTAGTCACCTGTGTCAGTTTCGGGTA 30015 >seq4903 Length=140833 Score = 77.0 bits (84), Expect = 5e-12 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACG-GGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||| ||| ||||||||||| |||||| || |||| | | Sbjct 4127 CACCCCTTCTCCCGAAGTTACGAGGGTCATTTTGCCGAGTTCCTTCGTCATGGTTCTCTC 4186 Query 202 GAACGCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGGTTTACGGTA 248 | |||| || ||| |||| || | ||||| |||| |||| |||| Sbjct 4187 AAGCGCCCTAATATACTCT--CTCATTCACCTATGTCAGTTTGGGGTA 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694129870588