Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq5932 91.5 2e-16 seq1768 86.0 7e-15 seq455 84.2 2e-14 seq8528 78.8 1e-12 seq4903 73.4 4e-11 >seq5932 Length=82879 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 61419 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 61362 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || || || || ||| || ||| |||||||| |||||||||||| || ||| || Sbjct 61361 GGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 61305 >seq1768 Length=251763 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 246252 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 246193 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 246192 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 246153 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 249639 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 249580 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 249579 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 249540 >seq455 Length=74106 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 3501 TAAGGAACTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 3558 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| | ||| ||||||| |||||||||||| || Sbjct 3559 GGGGTCGCAGTGACCAGGCTCGGGCGGCTGTTTACCAAAAACACAGGTCT 3608 >seq8528 Length=37810 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| ||| || | |||| ||||||||||| || |||| ||| | | ||| || Sbjct 30076 TAAGGAACTCGGCCAAATAGCCCTATAACTTCGGGAGAAGGGGTGCCTCCTTACAAAGGG 30135 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || |||| || ||| | |||||||||||| |||||||||||| || Sbjct 30136 GA--TTGCAGTGATCAGGCCTGGGCAACTGTTTACCAAAAACACAGGTCT 30183 >seq4903 Length=140833 Score = 73.4 bits (80), Expect = 4e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 48 GAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCT-GTA 106 || |||| || |||||||||| ||| || | |||||||| |||||| ||||||| ||| Sbjct 4204 GAGTATATTAGGGCGCTTGAGAGAACCATGACGAAGGAACTCGGCAAAATGACCCTCGTA 4145 Query 107 ACTTCGGGATAAAGGGT 123 ||||||||| || |||| Sbjct 4144 ACTTCGGGAGAAGGGGT 4128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530993357224