Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5932 178 3e-42 seq8528 123 5e-26 seq1768 107 4e-21 seq7494 102 2e-19 seq3448 98.7 2e-18 seq5567 93.3 8e-17 seq608 87.8 4e-15 >seq5932 Length=82879 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 60867 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 60808 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 60807 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 60749 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 60748 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 60689 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 60688 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 60639 >seq8528 Length=37810 Score = 123 bits (136), Expect = 5e-26 Identities = 147/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206 |||||| ||| |||||||||||| ||||| | | ||| |||| | | || | || Sbjct 30780 GCCTCCTAAAAGGTAACGGAGGCGTGCAAAGGTTCTCTCGAGCTAG-ACAGAGATTG-GC 30837 Query 207 GCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | | |||||||||||| ||||| | |||||| | | || | ||| |||||||| || Sbjct 30838 CCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTATAAGATCCACCTGTCGAGCAGGGATGA 30897 Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||||||| || | ||||| | ||||||||| ||||| ||||||| ||| |||||||||| Sbjct 30898 AAGTCGGCCTCAGTGATCTGACGGTGCTGAGTGGAAGGGCCGTCACTCAACGGATAAAAT 30957 Query 326 CTACCCTGGGGATA 339 ||| || |||||| Sbjct 30958 TTACTCTAGGGATA 30971 >seq1768 Length=251763 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 245671 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 245612 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 245611 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 245557 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 245556 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 245497 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 245496 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 245446 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 249058 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 248999 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 248998 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 248944 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 248943 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 248884 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 248883 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 248833 >seq7494 Length=113934 Score = 102 bits (112), Expect = 2e-19 Identities = 128/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| |||||||||| |||||||||||| ||||| | |||| | Sbjct 111157 CAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 111216 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 || ||| | || | | |||||||||||| ||||| | |||||||| | |||| Sbjct 111217 GCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCA 111275 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGG 299 | ||| ||| |||||||||||||| |||| ||| ||| |||| ||| ||| Sbjct 111276 CCCGTCGAGCCGGGACGAAAGTCGGCCTTAGTGA--CGGTGGTGGTGACTGG 111325 >seq3448 Length=221367 Score = 98.7 bits (108), Expect = 2e-18 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 35794 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 35853 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGG 299 || |||| ||||||| |||||| || ||| Sbjct 35854 GGCCTTAGTGATCCGACGGTGCCGAGTGG 35882 >seq5567 Length=223943 Score = 93.3 bits (102), Expect = 8e-17 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| | || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 170787 CGGGACACTACGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 170728 Query 170 CGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || ||| |||| ||| | || || | || || | ||| Sbjct 170727 TGTACGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTG-----AGCGTAATGGTATAAGCC 170673 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| ||||||||| || | || |||||||| Sbjct 170672 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTTGGCCATAGTGATCCGGGA 170613 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| ||||||| Sbjct 170612 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGTCGGGGATA 170562 >seq608 Length=53201 Score = 87.8 bits (96), Expect = 4e-15 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 ||||| |||||||||| |||||||||||| |||| | |||| | | ||| Sbjct 23905 GGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGAAAAGGTTTCCTCGGGCCAGCCGGAG 23846 Query 200 ACCATGCGCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCA 258 | || | || ||||||||||| || || | |||||| | | ||| | || |||| Sbjct 23845 ATTG-GCCCTCAAGTGCAAAGGCAGAAAGGAGCTTGACTACAAGACCTACCCATCAAGCA 23787 Query 259 GGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 |||||||||||||| ||| |||| || | ||| | ||||| |||| |||||| || | Sbjct 23786 GGGACGAAAGTCGGCCTTTGTGATTCGACAATGCCAAGTGGAAAGGCCATCGCTCAACAG 23727 Query 319 ATAAAAGCTA 328 |||||| || Sbjct 23726 GTAAAAGTTA 23717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982005507456