Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq5567 107 2e-21 seq1768 107 2e-21 seq5132 98.7 1e-18 seq40155 93.3 5e-17 seq6817 89.7 6e-16 seq8528 84.2 2e-14 seq5932 84.2 2e-14 seq608 84.2 2e-14 seq11980 78.8 1e-12 >seq5567 Length=223943 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 170932 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 170991 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 170992 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 171051 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 171052 GACAAGGAATTTCGCTACCTTAGGACAGTTA 171082 >seq1768 Length=251763 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 245816 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 245875 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 245876 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 245935 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 245936 GACAAGGAATTTCGCTACCTTAGGACAGTTA 245966 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 249203 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 249262 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 249263 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 249322 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 249323 GACAAGGAATTTCGCTACCTTAGGACAGTTA 249353 >seq5132 Length=261752 Score = 98.7 bits (108), Expect = 1e-18 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||||| | || | | ||||||| Sbjct 193064 GGTACTCTGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTTGGAGACAGCGGGG 193005 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||| |||||||| | ||| || ||||||||||||||||||||| Sbjct 193004 CAGTCGTTACACCATTCATGCAGGTCACTATTTATGCGTCAAGGAATTTCGCTACCTTAG 192945 Query 166 GACCGTTA 173 |||||||| Sbjct 192944 GACCGTTA 192937 >seq40155 Length=8454 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2988 TACGCCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 2929 Query 173 A 173 | Sbjct 2928 A 2928 >seq6817 Length=125852 Score = 89.7 bits (98), Expect = 6e-16 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | |||||||| | | |||| | ||||||| Sbjct 83253 GGTACTCTGCATCTTCACGGAGAATTTAATTTCACCGGGTCCACGTTGGAGACAGCAGGG 83312 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||||||| | |||||||||| ||||| || ||||||||||| |||||||| Sbjct 83313 CAGTCGTTACACCAATTGTGCAGGTCGTTACTTATGTGATAAGGAATTTCGTTACCTTAG 83372 Query 166 GACCGTTA 173 |||||||| Sbjct 83373 GACCGTTA 83380 >seq8528 Length=37810 Score = 84.2 bits (92), Expect = 2e-14 Identities = 97/132 (73%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG-CTCACGGTTGAGACAGN 101 || |||| || | ||||||| || | | ||||||| ||| ||| | ||||||||| Sbjct 30438 GCAGGTAGTCCGTATCTTCATAGACATGTCTATTTCACCGAGTCTCTCT-TTGAGACAGT 30380 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||| ||| ||||||||||||| ||| ||||||||| |||||| Sbjct 30379 GCCCAGATCGTTACGCCTTTCATGCGGGTCGGAACTTACTCGATAAGGAATTTTGCTACC 30320 Query 162 TTAGGACCGTTA 173 |||||||||||| Sbjct 30319 TTAGGACCGTTA 30308 >seq5932 Length=82879 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 61127 TACGCCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGATTGTT 61186 Query 173 A 173 | Sbjct 61187 A 61187 >seq608 Length=53201 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| | | |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 24172 TACGCCTTTCATCCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATCTTAGGACCGTT 24231 Query 173 A 173 | Sbjct 24232 A 24232 >seq11980 Length=9774 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| ||| Sbjct 487 TACACCTTTCGTACAGGTTGTAACTTACCCGACAAGGAATTTCACTACCTTAGGATTGTT 428 Query 173 A 173 | Sbjct 427 A 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546987133044