Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq5932 208 2e-51 seq113 203 7e-50 seq23811 181 2e-43 seq9133 143 6e-32 seq11164 132 1e-28 seq1472 82.4 2e-13 >seq5932 Length=82879 Score = 208 bits (230), Expect = 2e-51 Identities = 253/337 (75%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| | | |||||||||| |||| Sbjct 66619 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTGCCCCG-TCAGGCTTTCACCCA 66676 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||| ||| |||||||||| | ||||| Sbjct 66677 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAATCCCAGT 66736 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| ||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 66737 GTGGCTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 66796 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| | ||| || || Sbjct 66797 CAACTAGCTAATCAGACGCGAGCCCCTCCTCAT-GCGGA----------TTCCTCTTTTT 66845 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 || || || | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 66846 GCT-CCTCAG--CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 66900 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || |||||||||| || ||| || Sbjct 66901 GGGCAGGTTCTTACGCGTTACTCACCCATCTGCCACT 66937 >seq113 Length=48730 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 6777 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 6834 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 6835 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 6894 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 6895 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 6954 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || |||||||| | ||||| Sbjct 6955 GACCAACTACCTAATACTACGCGGGCTCATCAAACAGCGC 6994 >seq23811 Length=815 Score = 181 bits (200), Expect = 2e-43 Identities = 157/192 (82%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| || || |||||| || | |||| ||||||| | | | |||||||| |||| Sbjct 630 TTCACAACTCGTAGGCCTTCTATCTC-CACGTGGCATTGCTTTGTT-AGGCTTTCACCCA 573 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||| | | |||||||||| ||||| Sbjct 572 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCTGTGTCTCAGTCCCAGT 513 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| || ||||||||||| |||| || |||| |||||||||| ||| ||| |||||| Sbjct 512 GTGGCTAATCATCCTCTCGAACCAACTATTGATCATCGCCTTGGTAAGCTATTGCCTCAC 453 Query 182 CAACTAGCTAAT 193 |||||||||||| Sbjct 452 CAACTAGCTAAT 441 >seq9133 Length=53396 Score = 143 bits (158), Expect = 6e-32 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| | |||| |||| |||||| |||||| ||||||||||||| |||||||| | || Sbjct 14931 TCACTCGCGCGATATTGT-TGGATCGGGCTTTTGCCCATTGTCCAA-ATTCCCCATTACT 14874 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 || ||||| ||||||||| || ||||||||| |||||| |||||||||| | || Sbjct 14873 ACCCCCCGTGGGAGTCTGGGCCATGTCTCAGTCTTAGTGTGGCTGATCATCCGAAAAAAC 14814 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203 ||| || | ||| | | |||||| |||| |||||| || | ||| ||||| | || || Sbjct 14813 CAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCTGACTATCTACCTAATACTACACGGG 14754 Query 204 CTCATCTGATAGCGCA 219 |||||| | |||||| Sbjct 14753 CTCATCAAACAGCGCA 14738 >seq11164 Length=26493 Score = 132 bits (146), Expect = 1e-28 Identities = 134/171 (78%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT- 87 |||||||||||| || |||||||||| |||||||| | |||||| | |||| ||| Sbjct 4158 CACGCGGCATTG-CTCCATCAGGCTTTTGCCCATTGCGGACAATTCCCTATTGCTACCTG 4216 Query 88 -CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 ||| ||||||| ||| |||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 4217 CCCCATAGGAGTTTGGGTTGTGTCTTAGTCCCAATGTGGCTGATCATCCACTCAGACCAG 4276 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||| ||| | ||||||| || || ||||| ||||||||||||| || Sbjct 4277 CTACTAATCATTTCCTTGGTAAGA-ATAGCCTCAGCAACTAGCTAATCAGA 4326 >seq1472 Length=24911 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 95 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 154 |||| ||| |||||||| | | |||||| |||||||||||| ||||| ||| ||| Sbjct 4000 GAGTTTGGGTAGTGTCTCAATCCTAGTGTGGATGATCATCCTCTTGGACCAACTACTGAT 4059 Query 155 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | | ||||||| || ||| ||||||||||||| ||||| Sbjct 4060 CATTGCCTTGGAAAGTTATTGCCTCACCAACTAGTTAATC 4099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071569527680