Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq5932 232 2e-58 seq608 192 2e-46 seq1768 138 4e-30 seq5567 123 9e-26 seq5454 111 6e-22 seq3732 102 3e-19 seq7239 100 1e-18 seq9095 98.7 4e-18 seq38807 82.4 3e-13 >seq5932 Length=82879 Score = 232 bits (256), Expect = 2e-58 Identities = 332/460 (72%), Gaps = 27/460 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 62271 GCTGCACCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 62330 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 62331 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 62390 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||||||||||||| | ||||||| | | | | ||| Sbjct 62391 TTCACCCAAGCTTCATCCTGGTTATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 62450 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||| ||||||||| || || |||| Sbjct 62451 ACAAT----TGCCCTATGAAGACTCGCTTTAGCTACGGCT---CCGGTGGGTTCCCTTAA 62503 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| ||||||||||| || |||||||| |||| | Sbjct 62504 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTTAACAGGCACGCGGTCA----GA 62557 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || ||| || | ||||| | || ||||||||| Sbjct 62558 GCC--CCGGGCTC-----CTCCCACTACTTGGGAGCTTACGGTTTTATGTTCTATTTCAC 62610 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | ||||| |||||| | Sbjct 62611 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCAGTCACCCA 62670 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 ||||||||||| |||| |||||||| | |||||||| Sbjct 62671 GGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACA 62710 >seq608 Length=53201 Score = 192 bits (212), Expect = 2e-46 Identities = 330/474 (70%), Gaps = 35/474 (7%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||| || | | |||||| |||| |||||| Sbjct 25293 GCTGCGCCTCAACGCATTTCGGGGAGAACCAATTAGCTCTGGGTTTGAGTGGCATTTCAC 25352 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||| | ||||| |||||| | | | |||||| | ||| ||||||| ||||||| || Sbjct 25353 CCCCAACCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 25412 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| | || |||||||||||||| ||||||| | | | | ||| Sbjct 25413 TTCACCGATGCTTCATCTTGGTCATGGATAGATCACCCAAGTTCGGGTCCATAAGCAGTG 25472 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTA 369 || | ||| ||| |||||||||| ||||||||| | ||| ||| Sbjct 25473 ACAAT----TGCCTTATGAAGACTCGCTTTAGCTACGGCTTC----GGTGGGTTCCCTTA 25524 Query 370 ACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA---CC 425 ||| || ||| || | | ||| |||| |||| |||| ||||| | |||| || Sbjct 25525 ACCAAGC--CACTACCTATGAGTCGTTGGCTTATTCATCAACAGGCATGTGGTCAAAGCC 25582 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | | ||| | |||| | | ||| || | ||||||| || ||||| Sbjct 25583 TTG---------GGCTC-----CTCCCATTGCTTGGGAGCTTACGGTTTCATGTTCTATT 25628 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||| ||||||| | |||| |||||||||| | | |||||||||| Sbjct 25629 TCACTCCCCGATGGGGGTTCTTTTCAGCCTTCCTTCACGGTACTACTTCACTATCGGTCA 25688 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 25689 CCCAGGAGTATTTAGCCTTACAAGGTGGTCCTTACTGATTCACACGGGATTCCA 25742 >seq1768 Length=251763 Score = 138 bits (152), Expect = 4e-30 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 250754 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 250813 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 250814 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 250873 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 250874 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 250933 Query 266 GCTTCAACCTGCCCATGGATAGATC 290 ||||||||||| ||||| |||||| Sbjct 250934 TCTTCAACCTGCTCATGGCTAGATC 250958 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 251135 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 251194 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 251195 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 251254 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 251255 GAGGGTGGTCCC 251266 Score = 105 bits (116), Expect = 2e-20 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| |||||| |||| | Sbjct 251495 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGTACTCCCTAAATAGGGTTC 251554 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 251555 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 251614 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 251615 GAGGGTGGTCCC 251626 >seq5567 Length=223943 Score = 123 bits (136), Expect = 9e-26 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | |||| ||||| || | Sbjct 172483 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCAACATCATACGCTCTACTGA 172542 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| || |||||||||| | ||| ||||||||||||||||| |||| Sbjct 172543 AATAGATTTCGCAGAAAACCAGCTATATTCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 172602 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || || | |||||||||||| | | ||| | | Sbjct 172603 AAGTCATCCCCGTATTTTGCCACATACGTCGATTCGGTCCTCCAAGGCCTGTTAGAGCTC 172662 Query 266 GCTTCAACCTGCCCATGGATAGATC 290 ||||||||||| ||||| |||||| Sbjct 172663 TCTTCAACCTGCTCATGGCTAGATC 172687 >seq5454 Length=279160 Score = 111 bits (122), Expect = 6e-22 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 146 AAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCA 205 |||| |||||| ||| |||||||||| | | ||| |||||||||| |||||| ||| Sbjct 148195 AAATAGATTTCGTGGAAAACCAGCTATATCTGATCTTGGTTGGCCTTTCGCCCCTAGCCA 148136 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCG 264 || ||||||||| | ||| | || || ||||||||||||||||| | | ||| | Sbjct 148135 CAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAGGGCCTGTTAGAGCT 148076 Query 265 CGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||||| ||||| |||||| Sbjct 148075 CTCTTCAACCTGCTCATGGCTAGATC 148050 >seq3732 Length=238398 Score = 102 bits (112), Expect = 3e-19 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 146 AAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCA 205 |||| |||||| || |||||||||| || ||| ||||||||||||||||| ||| Sbjct 118186 AAATAGATTTCGCAGAAAACCAGCTATATTCAATCTTGGTTGGCCTTTCACCCCTAGCCA 118127 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCG 264 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | Sbjct 118126 TAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGTCCTGTTAGAGCT 118067 Query 265 CGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||| | ||||| |||||| Sbjct 118066 CTCTTCAACCTACTCATGGCTAGATC 118041 >seq7239 Length=210195 Score = 100 bits (110), Expect = 1e-18 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 |||| |||||||||||||||||||||||||||| |||||||||||| |||| || ||| Sbjct 99327 GGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTA 99268 Query 560 GGCTTAACGGGTGGTCCC 577 |||||| |||||||||| Sbjct 99267 GGCTTAGAGGGTGGTCCC 99250 >seq9095 Length=108482 Score = 98.7 bits (108), Expect = 4e-18 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 88 GGGCCCCCT-AGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| ||| || |||| ||||||||||||| | | |||| || || | | Sbjct 32491 GGGCCACCTTAGCCCATTGAGTGCTCTACCTCGAGCCATCAACAACATACTCTCTATTGA 32550 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| ||||| |||| | | ||| ||||||||||||||||| |||| Sbjct 32551 AATAGATTTCGCGGAAAACCAACTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 32610 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 | ||||||||| | ||| | || || |||||||| |||||||| Sbjct 32611 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCAGTCCTCCA 32654 >seq38807 Length=2803 Score = 82.4 bits (90), Expect = 3e-13 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || ||||| ||||||||||||||| | | ||| | |||| |||||| Sbjct 2678 GCTGCACCTTAACACATTTTGGGGAGAACCAGCTAGCTTTAGGTTCGCGTGGCATTTCAC 2737 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||||| |||| |||| || | | |||||| | ||| ||||||| ||| ||| Sbjct 2738 CCCTAACCACGACTCATTTGCTAATTCTTCAACATCAGTCGGTTCGGACCTTCAC 2792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816870124544