Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5932 187 6e-45 seq608 143 7e-32 seq1768 102 2e-19 seq7239 93.3 1e-16 >seq5932 Length=82879 Score = 187 bits (206), Expect = 6e-45 Identities = 301/415 (73%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 62337 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 62393 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| || ||||||||| ||| | || |||||| || | || Sbjct 62394 ACCCAAGCTT-CATCCTGGTTAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 62449 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| |||||| |||| | ||| |||| | Sbjct 62450 GACAATT-GCCCTATGAAGACTCGCTTTA-GCTACGGCTCCGGTGGGTTCCCTTAACCAA 62507 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | || ||| |||| |||| | | | Sbjct 62508 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTTAACAGGCACGCGGTCAG--AGCCCCGG 62564 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | ||||||| |||| || |||||||| | | ||||||||||||||| | |||| Sbjct 62565 GCTCCTCCCACTACTTGGGAGCTTACGGTTTTATGTTCTATTTCACTCCCCGATG-GGGG 62623 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||||||||| |||| ||| ||||||||||| Sbjct 62624 TTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCAGTCACCCAGGAGTATTTAGCC 62683 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| | || | ||||| || | ||||||| Sbjct 62684 TTACAAGGTGGTCCTTGCTGATTCACATGGGATTCCACGTGCCCCATGCTACTCG 62738 >seq608 Length=53201 Score = 143 bits (158), Expect = 7e-32 Identities = 269/379 (71%), Gaps = 26/379 (7%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||| | | || |||||| ||||||||||| |||||| ||||| | Sbjct 25359 CCACAACTCAT-CCGTTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 25415 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| || | || ||| ||||||||| ||| || |||||| || | || Sbjct 25416 ACCGATGCTT-CATCTTGGTCAT-GGATAGATCACCCAAGTT-CGGGTCCATAAGC-AGT 25471 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||| || |||||||||||| |||||| || | | ||| |||| | Sbjct 25472 GACAATT-GCCTTATGAAGACTCGCTTTA-GCTACGGCTTCGGTGGGTTCCCTTAACCAA 25529 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG- 245 |||||| || ||||| || | ||| ||| ||| | | |||| ||| Sbjct 25530 -GCCACTACCTATGAGTCGTTGGCTTATTCATCAACAGGCATGTGGTCA-------AAGC 25581 Query 246 --TGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| || |||||| || |||||||||| | ||||||||||||||| | Sbjct 25582 CTTGGGCTCCTCCCATTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 25641 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| | |||| ||||||||||| |||||||||||||| ||| |||||| Sbjct 25642 -GGGGTTCTTTTCAGCCTTCCTTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATT 25700 Query 361 TAGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 25701 TAGCCTTACAAGGTGGTCC 25719 >seq1768 Length=251763 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 251140 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 251198 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 251199 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 251258 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 251259 GTGGTCCCCC 251268 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||| | |||||||||| Sbjct 251500 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGTACTCCC-TAAATAGGGTTCTTTT 251558 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 251559 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 251618 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 251619 GTGGTCCCCC 251628 >seq7239 Length=210195 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | ||||| ||| ||| |||||| | |||||||||| Sbjct 99376 ACTGATTGTTCGCATCGAATCTCAGGTTCTCTATTGCACTCCT-TAAATAGGGTTCTTTT 99318 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 99317 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 99258 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 99257 GTGGTCCCCC 99248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241101423104