Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq5932 197 3e-48 seq23811 140 6e-31 seq113 140 6e-31 seq11164 109 1e-21 seq9133 89.7 1e-15 >seq5932 Length=82879 Score = 197 bits (218), Expect = 3e-48 Identities = 221/293 (75%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||||||||||||||||||||| ||||||| Sbjct 66662 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 66721 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| ||||| |||||| | ||| |||||| || ||||| |||| ||| |||||| Sbjct 66722 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGT 66781 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | ||||||||| || | || ||| ||| Sbjct 66782 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCATGCGGATTCCTCT 66841 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| |||||||| | Sbjct 66842 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 66885 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || |||||||| || ||| ||||||||||| || |||||| Sbjct 66886 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCATCTGCCACT 66937 >seq23811 Length=815 Score = 140 bits (154), Expect = 6e-31 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 74 ||| |||| ||||||| | || || ||||||||||||||||||||||||||| ||| ||| Sbjct 585 AGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCTGTG 526 Query 75 TCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGG 134 ||||||||||| |||||| ||| |||||| || ||| |||| ||| |||||| Sbjct 525 TCTCAGTCCCAGTGTGGCTAATCATCCTCTCGAACCAACTATTGATCATCGCCTTGGTAA 466 Query 135 GCTATTATCTCACCAACTACCTAAT 159 |||||| ||||||||||| ||||| Sbjct 465 GCTATTGCCTCACCAACTAGCTAAT 441 >seq113 Length=48730 Score = 140 bits (154), Expect = 6e-31 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 6817 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 6876 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 6877 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 6936 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183 |||||| || ||| || |||||||||||||| |||| || |||| ||||| Sbjct 6937 CTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCGGGCTCATCAAACAGCG 6993 >seq11164 Length=26493 Score = 109 bits (120), Expect = 1e-21 Identities = 216/310 (70%), Gaps = 25/310 (8%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCT--CCCGT 58 ||| | ||| ||||||| ||| ||||||| | | || ||| | |||| ||| ||| | Sbjct 4163 GGCATTGCTCCATCAGGCTTTTGCCCATTGCGGACAATTCCCTATTGCTACCTGCCCCAT 4222 Query 59 AGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCG 118 |||||| |||| |||||| |||||||||||||| | ||| || ||||| || ||||| Sbjct 4223 AGGAGTTTGGGTTGTGTCTTAGTCCCAATGTGGCTGATCATCCACTCAGACCAGCTACTA 4282 Query 119 ATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAG-CCCATCTT 177 ||| | |||||| | || |||| |||||| |||||| | | ||| |||||||| Sbjct 4283 ATCATTTCCTTGGTAAG-AATAGCCTCAGCAACTAGCTAATCAGATGTGAGCCCCATCTT 4341 Query 178 TCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATT---A 234 || | | || | || ||| ||||| | || | |||||| | Sbjct 4342 --AG-GTGGATTCCT---------CATTTTGC--TCCTC--AACCTACGGGGTATTAGCA 4385 Query 235 GCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCC 294 || |||||||| ||| |||| ||| || |||||||| || | ||||||||||||| Sbjct 4386 GCAACCGTTTCCAGCTGTTGTTCC-CTCCTAAGGGCAGGTT-CTTATGTGTTACTCACCC 4443 Query 295 GTCCGCCACT 304 |||| ||||| Sbjct 4444 GTCCACCACT 4453 >seq9133 Length=53396 Score = 89.7 bits (98), Expect = 1e-15 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || ||| |||||||| ||| || ||||| | || || ||||| ||||||||| Sbjct 14913 TGGATCGGGCTTTTGCCCATTGTCCAA-ATTCCCCATTACTACCCCCCGTGGGAGTCTGG 14855 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 ||| |||||||||| | |||||| | ||| || | || |||| ||| | |||| Sbjct 14854 GCCATGTCTCAGTCTTAGTGTGGCTGATCATCCGAAAAAACCAGCTAAGCATCATTGGCT 14795 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| || ||| || || | ||||||||| Sbjct 14794 TGGTTAGCCTTTACCTGACTATCTACCTAAT 14764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997999082496