Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq4931 82.4 9e-14 seq8536 80.6 3e-13 seq6118 80.6 3e-13 seq1970 80.6 3e-13 seq10593 77.0 4e-12 seq631 77.0 4e-12 seq13703 75.2 1e-11 seq5510 73.4 5e-11 >seq4931 Length=248149 Score = 82.4 bits (90), Expect = 9e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGT 70 ||||||| |||||| || | |||||| | |||| |||||||||||||| | | |||| Sbjct 83827 ACCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGT 83769 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 | || |||||||| ||||||||||| |||| |||| || Sbjct 83768 AGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 83730 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 94636 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 94694 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 94695 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 94729 >seq8536 Length=56880 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 41431 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 41373 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 41372 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 41335 >seq6118 Length=43452 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 42544 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 42486 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 42485 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 42448 >seq1970 Length=50579 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 18875 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 18933 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 18934 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 18971 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 47666 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 47724 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 47725 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 47762 >seq10593 Length=48225 Score = 77.0 bits (84), Expect = 4e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTAT-TCGGGCGTA 71 ||||||||||||| | | |||||| | |||| |||||||||||||| | | ||||| Sbjct 33340 CCAACAAAATAGGATTGAAA-TCCTATGATGTTATCCCATGCTAATGTATCTAGAGCGTA 33282 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | |||||| ||||||||||| |||| |||| || |||| Sbjct 33281 GGCTTTCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCACTGG 33238 >seq631 Length=233705 Score = 77.0 bits (84), Expect = 4e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | | |||| | |||| |||||||||||||| | | ||||| Sbjct 9869 CCAACAGAATAGG-ACCAAAATTCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 9927 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || |||||||| ||||||||||| |||| |||| || |||| Sbjct 9928 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCACTGG 9971 >seq13703 Length=3969 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 3930 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 3872 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| || |||||||| |||| |||| || Sbjct 3871 GGCTTGCTTTGAGCATTCTAATTTCTTCAAAGTAACAG 3834 >seq5510 Length=63521 Score = 73.4 bits (80), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 40738 TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAA 40797 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| |||| || Sbjct 40798 TTTCTTCAAAGTAATAG 40814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594968460504