Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq5932 187 6e-45 seq5567 172 1e-40 seq1768 167 5e-39 seq38807 136 9e-30 seq608 122 2e-25 seq2379 116 9e-24 seq1577 105 2e-20 seq2873 96.9 8e-18 seq9762 95.1 3e-17 seq6264 80.6 6e-13 >seq5932 Length=82879 Score = 187 bits (206), Expect = 6e-45 Identities = 293/409 (72%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| | ||||||||| | ||| ||| | | Sbjct 61721 CGACTACGCCTTTCGGCCTGATCTTAGGCCTTGACTCACCCTCCGTGGACGAACCTTGCG 61780 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 61781 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 61840 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || | ||| |||| || || | | Sbjct 61841 ACATTCTCGCTTCCGCTTCG--TCCACCGCTGC-TCTCGCGGGTACTTC-CCTCTAAGGC 61896 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||| | | | ||| | ||||||||||||| ||| |||| | Sbjct 61897 GGAACGCTCCCCTAACGATGCCTTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 61952 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| |||| || | | || || ||||||||||||||||||||||||||| Sbjct 61953 CCCCGTT-CATCTTCGGTGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 62011 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| | ||| ||| | | || |||||| |||| Sbjct 62012 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTCTGCACCCCTACCTCCTTTATCACTA 62071 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||| ||||||||||| Sbjct 62072 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTATTTCCCTCTCG 62120 >seq5567 Length=223943 Score = 172 bits (190), Expect = 1e-40 Identities = 154/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||||||||| | |||||| |||| || ||| || ||||||| Sbjct 172206 GCTTCGGTGAATCACTTAAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 172262 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 172263 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 172322 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 172323 CTTGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 172382 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 172383 GTTTCCCTCTCG 172394 >seq1768 Length=251763 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 250477 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 250533 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 250534 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 250593 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 250594 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 250653 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 250654 GTTTCCCTCTCG 250665 >seq38807 Length=2803 Score = 136 bits (150), Expect = 9e-30 Identities = 149/194 (77%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| || ||| || ||| ||||| ||| || | ||| | ||||| | | || || || Sbjct 2337 CCATAGTTTCAGCAGATCACTTA-GCCTCGTT-CATCTTTGGCGCAAGAGCGCTCGATCA 2394 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||| ||||||||||||| |||||||||| | || |||||||| |||||| Sbjct 2395 GTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTAATTGTCTC 2454 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| | ||||||||||||| || |||| || Sbjct 2455 TGCACCCCTACCTCCTTTATCACTGAGCGGTTATTTAGGGGCCTTAGTTG-GGATCCAGG 2513 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 2514 CTGTTTCCCTCTCG 2527 >seq608 Length=53201 Score = 122 bits (134), Expect = 2e-25 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| || | | |||| |||| |||||| | ||| |||||| | ||||| || Sbjct 24951 CCACAATTTTGACAGATAGCTTA-GCCCCGTT-CATCTTCGGCGTAAGAGTTCTTGATCA 25008 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||||||| ||| |||||| | || ||||| || | ||||| Sbjct 25009 ATGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACCTTCTAGCTGTCTC 25068 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 || | | || | |||| |||| || || |||||| |||||| || ||||| ||| Sbjct 25069 TACACCCCTACCTTCTTTATCACTAAGCGGTCATTTAGGGTCCTTAGTTGGTGATCCGGG 25128 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 25129 TTGTTTCCCTCTCG 25142 >seq2379 Length=50710 Score = 116 bits (128), Expect = 9e-24 Identities = 143/193 (74%), Gaps = 12/193 (6%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 11332 CTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAAACCAGTG 11388 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||| |||| |||| |||||||||||||||||| || |||||||| ||||| | Sbjct 11389 AGCTATGACGCTTTCTTCAAAGGATGGCTGCTTCCAATCCCACCTCCTGTTTGTCATC-- 11446 Query 330 AACTC---CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | || ||| |||||| ||||| ||| | || | || || || |||||||||| Sbjct 11447 -AGTCGATCACTTCCTTTTCCACTAAGTGATTGCTCAAGGATCTCAGTGTATGATCTGGG 11505 Query 387 CTGTTTCCCTCTC 399 |||||||||||| Sbjct 11506 TTGTTTCCCTCTC 11518 >seq1577 Length=200341 Score = 105 bits (116), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 9/181 (5%) Strand=Plus/Minus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | |||||| ||||||| |||| || ||| |||| Sbjct 134767 CTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGCGCCTTGGAA---CTAGACTAGTG 134711 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC--TAC 327 |||||||| || |||| |||||||| |||||||||||| ||||||| |||||| | | Sbjct 134710 AGCTATTATGCTTTCTTCAAAGGATGGTTGCTTCCAAGCCCACCTCCTAGTTGTCATTGC 134651 Query 328 GCAA-CTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | | ||| ||||| ||| | ||||||| ||||||| | |||| || Sbjct 134650 TCAATCACTTTTTTTTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACAATCTAGG 134591 Query 387 C 387 | Sbjct 134590 C 134590 >seq2873 Length=196027 Score = 96.9 bits (106), Expect = 8e-18 Identities = 134/182 (74%), Gaps = 12/182 (7%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | |||||| |||| || ||| || ||| |||| Sbjct 147409 CTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCTTGGAG---CTAGACTAGTG 147465 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC--TAC 327 ||||||| || |||| ||||||||||||||||||||| ||||||| |||||| | | Sbjct 147466 GGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTCATTGC 147525 Query 328 GCAACTCCACATCCTT-TC-CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| ||| | || || ||||| ||| | ||||||| ||||||| | |||| | Sbjct 147526 TCAA--TCACTTTTTTGTCTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACAATCTAG 147583 Query 386 GC 387 || Sbjct 147584 GC 147585 >seq9762 Length=94213 Score = 95.1 bits (104), Expect = 3e-17 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||||||||| ||||| ||||| | ||| | | ||||| ||| | || Sbjct 8297 AGTGAGCTATTACGCACTCATTCAATGATGGTTACTTTTACGAAAACCTTATGGCTAGCT 8356 Query 326 A-CGCAACTCC---ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 | | | || || || || ||| || |||| | || |||||||||||||||| |||| Sbjct 8357 ATCTCTACACCCCTACCTCATTTATCAATGAGCAATCATTTAGGGGCCTTAGCTGGTGAT 8416 Query 382 CTGGGCTGTTTCCCTCTC 399 ||||||||||| ||||| Sbjct 8417 ATGGGCTGTTTCACTCTC 8434 >seq6264 Length=34730 Score = 80.6 bits (88), Expect = 6e-13 Identities = 99/134 (74%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||| ||| || ||||||||||| | ||| | | |||||| ||| | ||| Sbjct 13995 AGTGAGCTATTATGCAATCATTCAAGGATGGTTACTTTTACGAAAACCTCATGGCTATCT 13936 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| || || || ||| || ||||| || ||||||||||||||| |||| | Sbjct 13935 CTGCACCT-TACCTCATTTGTCAATGAGTGGTCATTTAGGGGCCTTAGCTAGTGATTCGA 13877 Query 386 GCTGTTTCCCTCTC 399 ||| ||| ||||| Sbjct 13876 GCTATTTTTCTCTC 13863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177127122944