Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq5932 131 1e-28 seq1330 131 1e-28 seq113 118 9e-25 seq5978 89.7 4e-16 seq9133 86.0 5e-15 >seq5932 Length=82879 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | | ||| |||| ||||||| ||||||||| Sbjct 65751 CGAGTTGCAGCCTACAATCCGAACTGAGGAAGGGTTTTTGGGGTTAGCTCACCCTCGCGG 65810 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 65811 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 65870 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 65871 AATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 65910 >seq1330 Length=44643 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || |||||||||| |||| | ||| |||| ||||||| ||||||||| Sbjct 24967 CGAGTTGTAGCCTACAATCCGAACTAAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 24908 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 24907 GTTCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 24848 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||| ||| || |||| Sbjct 24847 GATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 24808 >seq113 Length=48730 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| || | | ||||| || ||| ||||| ||| | | Sbjct 5558 CGAGTTGCAGAGAACAATCCGAACGGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 5616 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 5617 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 5676 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 5677 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 5716 >seq5978 Length=44522 Score = 89.7 bits (98), Expect = 4e-16 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||| || |||||||| | | | | ||| ||| |||| ||||||| ||||| || Sbjct 39507 CGAGTTGGAGCCTACAATCTGAATTGAGGATGGGTTTT-TGGGGTTAGCTCACCCTCACG 39565 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| || | |||||||| || |||| |||| |||||||| || Sbjct 39566 GGATCACGACCCTTTGCCTTGGCCATTGTAGCACATGTGTTGCCCAGGGCATAAGGGGCA 39625 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCC 151 ||| ||||||||||||||| ||| || |||| Sbjct 39626 TGATGACTTGACGTCATCCTCACGTTTCTCC 39656 >seq9133 Length=53396 Score = 86.0 bits (94), Expect = 5e-15 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| | ||||| |||| ||||||||||||||| |||||||| || Sbjct 16103 TGTAATTGCCATTGTAGCATGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGATGT 16044 Query 135 CATCCCCACCTTCCTCC 151 ||||||||||||||||| Sbjct 16043 CATCCCCACCTTCCTCC 16027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415838171320