Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq5932 268 1e-69 seq1768 199 6e-49 seq8528 196 8e-48 seq5567 196 8e-48 seq608 111 2e-22 seq8483 96.9 5e-18 seq6979 84.2 3e-14 >seq5932 Length=82879 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 60316 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 60375 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 60376 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 60435 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 60436 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 60495 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 60496 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 60555 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 60556 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 60588 >seq1768 Length=251763 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 245145 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 245204 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 245205 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 245264 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 245265 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 245324 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 245325 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 245384 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 245385 AGTCGACATCG 245395 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 248532 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 248591 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 248592 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 248651 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 248652 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 248711 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 248712 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 248771 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 248772 AGTCGACATCG 248782 >seq8528 Length=37810 Score = 196 bits (216), Expect = 8e-48 Identities = 208/273 (76%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||| |||||| | | |||| ||| |||||| Sbjct 31294 GGTGGGCTTACTACTTAGATGCTTTCAATAGTTATCCACTTCGCACTTGGCTACCCAGCG 31235 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||| | ||||||| ||||||| || |||| |||||||||||||||||| Sbjct 31234 TTTATTGTGGGCATGATAACTGGTACACCAGATGTGCGTCCTTCCCGGTCCTCTCGTACT 31175 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||||| || ||||||||| || || ||||| || |||| |||| ||||| || | | Sbjct 31174 AAGGAAAGGTCCTCTCAATGCTCTAACTCCCACAACAGATATGGACTGAACTATCCCAGG 31115 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| ||||||||| | || ||||||||||||||||||||||||||||| || | Sbjct 31114 ACGTTCTAAACCCAGCTTATTTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 31055 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | |||||||||| | || |||| |||||| Sbjct 31054 AATACAGCCCCAGGTGGCGAAAAGCCAACATCG 31022 >seq5567 Length=223943 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 170261 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 170320 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 170321 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 170380 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| || ||| Sbjct 170381 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAAATCACGT 170440 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 170441 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 170500 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 170501 AGTCGACATCG 170511 >seq608 Length=53201 Score = 111 bits (122), Expect = 2e-22 Identities = 134/188 (71%), Gaps = 22/188 (12%) Strand=Plus/Plus Query 86 TGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC 145 |||||||||||| |||| |||||||||| || ||||| ||| || ||||||||| || Sbjct 23527 TGCACCAGAGGTGCGTCCTTCCCGGTCCTTTCATACTAGGGAAAGGTCCTCTCAATACTC 23586 Query 146 CTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205 | |||||| |||||| ||| |||||||||| | || ||||| Sbjct 23587 TAATGCCCACACCGGATATGGATTGAACTGTCTCACAACATTCTG--------------- 23631 Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 |||||||||| |||||||||||||| || |||| | |||||||| | || || Sbjct 23632 -------AATGGGCGAATAGCCCAACCCTTGGAACATACTACGGCCCCAGGTAGCGAAGA 23684 Query 266 GCCGACAT 273 | |||||| Sbjct 23685 GTCGACAT 23692 >seq8483 Length=26421 Score = 96.9 bits (106), Expect = 5e-18 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 126 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 67 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 66 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 7 Query 123 AAGGA 127 | ||| Sbjct 6 AGGGA 2 >seq6979 Length=44271 Score = 84.2 bits (92), Expect = 3e-14 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 172 ACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231 ||| |||| ||| || |||| |||||| ||| | |||||||||||||||| |||||| Sbjct 28463 ACTCTCTCATGACATTTTGAATTCAGCTCACGTACTGCTTTAATGGGCGAACAACCCAAC 28404 Query 232 CCTTGGGACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 |||||| || |||| || | | ||| ||| || |||| ||||||| Sbjct 28403 CCTTGGAACATACTACAACTCTAGG-TGACGAAGAGCTGACATCG 28360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780496260016