Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq5932 232 2e-58 seq23811 176 1e-41 seq113 172 1e-40 seq11164 123 6e-26 >seq5932 Length=82879 Score = 232 bits (256), Expect = 2e-58 Identities = 293/403 (73%), Gaps = 30/403 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| || | |||||||| | |||||| Sbjct 66619 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCCCCGTCAGGCTTTCACCCATT 66678 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||| ||| |||||||||| | ||||||| Sbjct 66679 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGT 66738 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| |||||||| |||| |||||| ||| || ||| || | ||| Sbjct 66739 GGCTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 66798 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | || | | | || || |||| Sbjct 66799 ACTAGCTAATCAGACGCGAGCCCCTCC--TCATGCG---------GATTCCTCTTTTTGC 66847 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 66848 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 66905 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||| || |||||| ||| || || |||| Sbjct 66906 GGTTCTTACGCGTTACTCACCCATCTGCCACT------GGAAACACCA-----CTTC--- 66951 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 |||| |||||||||||||||| || || |||||||||||| Sbjct 66952 ---CCGTCCGACTTGCATGTGTTAAGCATGTCGCCAGCGTTCA 66991 >seq23811 Length=815 Score = 176 bits (194), Expect = 1e-41 Identities = 153/190 (81%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || ||||| || ||||||||| | |||| ||||| ||| | |||||| | |||||| Sbjct 630 TTCACAACTCGTAGGCCTTCTATCTCCACGTGGCATTGCTTTGTTAGGCTTTCACCCATT 571 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||| | | |||||||||| ||||||| Sbjct 570 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCTGTGTCTCAGTCCCAGTGT 511 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||| |||||||||| |||| ||| |||| |||||| ||| || ||| || | ||| Sbjct 510 GGCTAATCATCCTCTCGAACCAACTATTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 451 Query 185 ACTAGCTAAT 194 |||||||||| Sbjct 450 ACTAGCTAAT 441 >seq113 Length=48730 Score = 172 bits (190), Expect = 1e-40 Identities = 164/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 6777 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 6836 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 6837 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 6896 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 6897 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 6956 Query 182 CCAACTAGCTAATCCCATCTGGGTTCATC 210 ||||||| ||||| | | ||| ||||| Sbjct 6957 CCAACTACCTAATACTACGCGGGCTCATC 6985 >seq11164 Length=26493 Score = 123 bits (136), Expect = 6e-26 Identities = 135/177 (76%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 ||||| | | |||||||||| ||| |||||||||| |||||||| | | |||||| | Sbjct 4148 CTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTTGCCCATTGCGGACAATTCCCTAT 4207 Query 81 TGCTGCCT--CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 |||| ||| ||| ||||||| ||| |||||| ||| ||| |||||||| |||||| | Sbjct 4208 TGCTACCTGCCCCATAGGAGTTTGGGTTGTGTCTTAGTCCCAATGTGGCTGATCATCCAC 4267 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||||||| ||| | ||| ||| | || || | ||||||||||||| Sbjct 4268 TCAGACCAGCTACTAATCATTTCCTTGGTAAG-AATAGCCTCAGCAACTAGCTAATC 4323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221909133056