Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq5932 315 2e-83 seq113 269 8e-70 seq9133 168 2e-39 seq23811 167 7e-39 seq11164 147 7e-33 >seq5932 Length=82879 Score = 315 bits (348), Expect = 2e-83 Identities = 277/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 66816 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 66757 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||| ||||| |||||| ||| | |||||||||| ||||||||||||||||||||| Sbjct 66756 TCGAGAGGATGATCAGCCACACTGGGATTGAGACACGGCCCAAACTCCTACGGGAGGCAG 66697 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | ||||||| ||||||||| | |||| |||||||| | || Sbjct 66696 CAGTGGGGAATTTTCCGCAATGGGTGAAAGCCTGACGGGGCAATGCCGCGTGGAGGTAGA 66637 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | | | ||||| ||||| |||| |||||| Sbjct 66636 AGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGATGGTATCTGAGGAAT 66577 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||| ||||||||| ||| || ||||||||||| Sbjct 66576 AAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCCG 66517 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 66516 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 66475 >seq113 Length=48730 Score = 269 bits (298), Expect = 8e-70 Identities = 264/337 (78%), Gaps = 5/337 (1%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| ||||| |||||||| |||||| |||| |||||| | | ||| |||| | Sbjct 6979 CCCGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTG 6920 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 || || ||||| |||||| ||| |||||||||||| || ||||| ||||| ||| Sbjct 6919 GTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGC 6860 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| ||| ||||||||| |||||| ||| |||||| |||||||| || Sbjct 6859 AGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAA 6800 Query 338 GAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAG 393 ||||| | | | | | |||||||||| || || | | ||| ||||| | ||| ||| Sbjct 6799 GAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAG 6740 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || ||||||||||| |||| |||||||||||||||||||| ||| |||||| || ||| Sbjct 6739 GAAGAAGCCCCGGCGAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTC 6680 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | |||||| ||| |||||||||||| |||||| ||| Sbjct 6679 TTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 6644 >seq9133 Length=53396 Score = 168 bits (186), Expect = 2e-39 Identities = 231/317 (73%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||| | || |||||| |||| |||||| | | ||| |||| | | || Sbjct 14764 ATTAGGTAGATAGTCAGGTAAAGGCTAACCAAGCCAATGATGCTTAGCTGGTTTTTTCGG 14823 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| | ||||||||| || ||| ||||| ||||| || || | ||||| Sbjct 14824 ATGATCAGCCACACTAAGACTGAGACATGGCCCAGACTCCCACGGGGGGTAGTAATGGGG 14883 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| ||| |||||||||||||||| ||| || ||| |||| ||| ||| |||| | Sbjct 14884 AAT-TTGGACAATGGGCAAAAGCCCGATCCAACAATATCGCGCGAGTGATTAAGGGCAAT 14942 Query 348 GGGTC--GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | || |||||||||| || | || | || ||||| | |||| |||| ||||||| Sbjct 14943 GCCTCTTGTAAAGCTCTTTCATTGAGTGGGTAATCATGACAGGACTTAAGGAAGAAGCCC 15002 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC--GTAGGGGGCTAGCGTTATCCGGAAT 461 |||| |||| ||||||| ||| || |||| || | |||||| || ||| | | |||| Sbjct 15003 CGGCGAACTCCGTGCCAACAGTTGCAGTAACACAGGAGGGGGGCAAGTGTTCTTCAGAAT 15062 Query 462 TACTGGGGCGTAAAGGG 478 ||| ||| |||||||| Sbjct 15063 GACT-GGGAGTAAAGGG 15078 >seq23811 Length=815 Score = 167 bits (184), Expect = 7e-39 Identities = 173/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||||||||||||| ||| || |||||||||||||| ||||| ||| | |||||| Sbjct 441 ATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAATAGTTGGTTCGAGAGG 500 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| ||| |||||||||| | | | ||||||||||||||||||||||||| Sbjct 501 ATGATTAGCCACACTGGGACTGAGACACAGCCTAGACTCCTACGGGAGGCAGCAGTGGGG 560 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-GAAGGCCTT 346 ||| || | ||||||| ||||||| | ||||| ||| |||| | ||| |||||||| Sbjct 561 AATTTTCCGCAATGGGTGAAAGCCTAACAAAGCAATGCCACGTG-GAGATAGAAGGCCTA 619 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA 387 || || || || ||| | | || ||||| ||||| |||| Sbjct 620 CGAGTTGTGAATTTCTTTTCCCAGAGAAGAAGCAATGATGGTA 662 >seq11164 Length=26493 Score = 147 bits (162), Expect = 7e-33 Identities = 136/170 (80%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||| | ||| | |||||||||| | ||| |||||| | |||| Sbjct 4326 TCTGATTAGCTAGTTGCTGAGGCTATT-CTTACCAAGGAAATGATTAGTAGCTGGTCTGA 4268 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGG--AGGCAGCA 281 | || ||||| |||||||||| ||| |||||| ||||||||||| ||| ||| |||| Sbjct 4267 GTGGATGATCAGCCACATTGGGACTAAGACACAACCCAAACTCCTATGGGGCAGGTAGCA 4208 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 | |||||| | | |||||||||||||||||||| ||||| |||||||| Sbjct 4207 ATAGGGAATTGTCCGCAATGGGCAAAAGCCTGATGGAGCAATGCCGCGTG 4158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496998623744