Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq5932 266 8e-69 seq113 212 2e-52 seq4059 167 6e-39 seq9133 113 1e-22 seq12904 102 2e-19 seq4070 98.7 2e-18 seq3448 82.4 2e-13 seq112 73.4 1e-10 >seq5932 Length=82879 Score = 266 bits (294), Expect = 8e-69 Identities = 305/408 (75%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| |||||||||||| ||||||||| ||| || ||| Sbjct 66584 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGC 66525 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 66524 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 66465 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 66464 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 66405 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 66404 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 66345 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | ||||||||||| ||||||| |||||| || ||||| Sbjct 66344 AGCACTCTGCTGGGCCGACACTGACACTGAAAGACGAAAGCTAGGGGAGTGAATGGGATT 66285 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 |||||||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 66284 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGTGT---CGA 66229 Query 365 TCCG----GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||| | ||| || || ||||||| |||||||||||||| Sbjct 66228 CCCGTGTAGTGCTGTAGCTAATGCGTTAAGTATCCCACCTGGGGAGTA 66181 >seq113 Length=48730 Score = 212 bits (234), Expect = 2e-52 Identities = 253/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| ||||||||||| |||| |||||||||||||||||||| ||| |||||| Sbjct 6746 ACTCGAGGAAGAAGCCCCGGCGAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 6687 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 6686 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 6627 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 6626 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 6573 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 6572 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 6513 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 6512 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 6453 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 6452 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 6413 >seq4059 Length=8273 Score = 167 bits (184), Expect = 6e-39 Identities = 226/315 (72%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 31 TGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAG 90 ||| ||||||| |||||||| ||| | ||| ||||| |||| | | || ||||| Sbjct 2256 TGCTAGCAGCCACGGTAATATAGAGGATACAAGCATTATCTAGAATGATTAGGTATAAAG 2315 Query 91 GGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCT 150 | |||||||| || ||||||| | | ||| | | |||||||||| || || Sbjct 2316 CATTTGTAGGTGGCTTTTTAAGTCTGCTATCAAATCCCAAGGCTCAACCCTGGACAAGCA 2375 Query 151 TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAA 210 | |||||| | ||| |||| | | ||||||| | |||| | | || ||||||||| Sbjct 2376 ATGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGAAATTTCCAATGGAGCGGTGAA 2435 Query 211 ATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACA 270 || |||||| || || | |||||||| ||| ||| || ||| ||| | ||| ||| Sbjct 2436 ATACGTAGAGATCAGAAAGAACACCAATGGTGAAAGCACTTTGTTGGGCCAACACTAACA 2495 Query 271 CTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAA 330 || || |||||| |||||||||| ||||||||||||| ||||||| ||||||| Sbjct 2496 CTAAGAGACGAAAGTTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAA 2555 Query 331 ACGATGAATACTAGG 345 || ||| |||||||| Sbjct 2556 ACAATGGATACTAGG 2570 >seq9133 Length=53396 Score = 113 bits (124), Expect = 1e-22 Identities = 235/343 (69%), Gaps = 14/343 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC--GTAGGGGG 59 |||| |||| ||||||||||| |||| ||||||| ||| || |||| || | ||||| Sbjct 14986 ACTTAAGGAAGAAGCCCCGGCGAACTCCGTGCCAACAGTTGCAGTAACACAGGAGGGGGG 15045 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || ||| | | |||| |||||| |||||||| ||| | || | | || | | Sbjct 15046 CAAGTGTTCTTCAGAATGACTGGGAGTAAAGGGCATGTATGCAGTGAATCAGGTTGAAAG 15105 Query 120 TGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCA 175 | |||| || | || | | ||| |||| | ||||| | || || || || Sbjct 15106 TTAAAG---TTGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGATTGAG 15159 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235 || || ||||||||| | ||||| |||||||| | |||| |||||| || Sbjct 15160 ACAGAGGAGAGTGGAATTTCATGTGTAAGGGTGAAATCTGGAGATCCACAAAGGAACGCC 15219 Query 236 AGTGGCGAAGGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 | |||||||| || || || | || | || ||| | ||||||| ||| |||| Sbjct 15220 AAAAGCGAAGGCAACTCTCTAGGTCCCTATC-GATGCTGGAGTGCGAAAGCTTGGAGAGC 15278 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| ||||||||| |||| |||||||| ||||||||| |||| Sbjct 15279 GAACGGGATTAGATGCCCTAGTAGTCCATGCCGTAAACAATGA 15321 >seq12904 Length=20283 Score = 102 bits (112), Expect = 2e-19 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44 GGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103 |||||||| ||| |||||| ||||| | ||| | ||||||| ||| || |||||||| Sbjct 5785 GGTAATACAGAGGATGCTAGCATTATCAGTAATGATTGGGCGTTAAGTGTATGTAGGTGG 5844 Query 104 TTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAG 163 || ||||||| | || ||| || |||||||||| | || | |||||| | Sbjct 5845 CTTTTTAAGTCTGTTGTCAAATCTTAGGGCTCAACCCTAGACAGGCGGTAGAAACTACCA 5904 Query 164 GGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATT 223 |||||||| | ||||| | |||||| | |||| || |||||| | |||| || Sbjct 5905 AGCTAGAGTACGATAGGGGTAGAGGGAATTTCCAGTGGAGTAGTGAAAAACATAGAGATC 5964 Query 224 AGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGA 274 || | |||||||| |||| || | |||| | | ||||||||||| Sbjct 5965 AGAAAGAACACCAACAACGAAAGCACTCTACTGGGCCGACACTGACACTGA 6015 >seq4070 Length=443632 Score = 98.7 bits (108), Expect = 2e-18 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||| | |||| |||||||||||| ||||| || | | |||||||| ||| | || Sbjct 366637 GAATTTCCAGTGGAGCGGTGAAATGTGTAGAGATCAAAAAGAACACCAACGGCTTAAGCA 366578 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 |||||| | | ||||||| |||| ||||||| |||||| || ||||||||| Sbjct 366577 CTCTGCTGGGCCGACACTGACATTGAGAGACGAAAGCTAGGGGAGTGAATGGGATTAGAT 366518 Query 309 ACCCTGGTAGTCCACGCCGTAAACGAT 335 |||| ||||||| ||| |||||||| Sbjct 366517 ACCCCAGTAGTCCTAGCCATAAACGAT 366491 >seq3448 Length=221367 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| ||||||| || |||||||||||| Sbjct 36945 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACC 37004 Query 312 CTGGTAGTCCACGCCGTAAACGATGAAT 339 | ||||||| ||||||||||||| || Sbjct 37005 CCAGTAGTCCTAGCCGTAAACGATGGAT 37032 >seq112 Length=861014 Score = 73.4 bits (80), Expect = 1e-10 Identities = 105/148 (71%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127 CTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAG 186 ||| |||||| ||| ||| || | |||||| | |||||||| | ||||| | Sbjct 146821 CTAGGGCTCACCCCTGGGCAAGCAGTGGAAACTACCAAGCTAGAGTACGATAGGGGTAGA 146880 Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 |||||| | ||| | |||||||||||||||| || | | |||||||| |||||| | Sbjct 146881 AGGAATTTCCGGTGGAACGGTGAAATGCGTAGAGATAAAAAAGAACACCAACGGCGAAAG 146940 Query 247 CGGCTTGCTGGACTGTAACTGACACTGA 274 | ||||| | ||| ||| ||| ||| Sbjct 146941 CACTTTGCTAGGCTGACACTAACATTGA 146968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202716843008