Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1768 174 5e-41 seq5932 163 1e-37 seq5567 158 4e-36 seq3732 118 4e-24 seq608 109 2e-21 seq9095 100 1e-18 seq38807 80.6 9e-13 >seq1768 Length=251763 Score = 174 bits (192), Expect = 5e-41 Identities = 321/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 250973 GACCCGAAACCGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 250914 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 250913 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 250854 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 250853 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 250796 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 250795 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 250736 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| || || ||||| Sbjct 250735 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTAGGGTG 250680 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 250679 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 250620 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 250619 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 250564 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 250563 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 250524 >seq5932 Length=82879 Score = 163 bits (180), Expect = 1e-37 Identities = 395/586 (67%), Gaps = 44/586 (8%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||| Sbjct 62472 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATA 62413 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 62412 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 62353 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 62352 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 62293 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || |||| || ||| | || |||| |||||| ||||||||| Sbjct 62292 CCGAAATGCGTTGAGGTGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 62238 Query 237 ATGGCTAGGGGGTCATTGC--GACT--TACCAAACCATTGCAAACTCCGAATGC------ 286 | | | | ||| | || || | ||||||| | |||||||| ||| | Sbjct 62237 -TCGAT-GCGGGCC---GCAAGAGTGGTACCAAATCGAGGCAAACTCTAAATACTAGATA 62183 Query 287 --GCATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTG 333 | ||| | || | || |||||| ||||| | |||| | | | Sbjct 62182 TGACCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATC 62123 Query 334 CCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAAC 393 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | Sbjct 62122 GTCGAGAGGGAAATAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTTAGTGATA- 62064 Query 394 TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAA 453 || || || | ||| ||| ||| |||| ||| || | |||||||||| | || || Sbjct 62063 -AAGGAGGTAGGGGTGCAGAGATAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAA 62006 Query 454 AGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGT 513 ||||||||||| |||||||| ||||| || || || || | |||| |||| Sbjct 62005 AGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCACCGAAGATGAACGGG-GCTAAGC 61947 Query 514 TGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | | | |||| ||||||||| Sbjct 61946 GATCTGCCGAAGCTGTGGGAT-GTAAAAAGGCATCGTTAGGGGAGC 61902 >seq5567 Length=223943 Score = 158 bits (174), Expect = 4e-36 Identities = 317/460 (69%), Gaps = 24/460 (5%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||||||||| |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 172702 GACCCGAAACTGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 172643 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| | || |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 172642 GGACCGAATCGACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 172583 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC--CTCAAGTA 211 || ||| | | | |||||||||| ||| ||||| |||||| |||| || | | || Sbjct 172582 AACCAAGATCGAATATAGCTGGTTTTCTGCGAAATCTATTTCAGTAGAGCGTATGATGT- 172524 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAACC 268 | | | | ||||||||||| |||||||| | |||| || |||||||| || Sbjct 172523 TGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCC 172464 Query 269 ATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGC 322 | ||| ||||||| | || ||| |||||| || || |||||| Sbjct 172463 CAGGGAAATTCCGAATACAGGCCTAGATCGTTTTTAC----AGACAGACTTTTAGGGTGC 172408 Query 323 TAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAG 382 |||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 172407 TAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCA 172348 Query 383 CTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCA 440 || ||| || || |||| |||| || | |||| | |||| || |||||||||||| Sbjct 172347 CTTAGTGGAA--AAGGAAG--TGATCAAGCGATGACAACCAGGAGGTGGGCTTGGAAGCA 172292 Query 441 GCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||| || ||| |||| |||||| |||||||| ||| || Sbjct 172291 GCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 172253 >seq3732 Length=238398 Score = 118 bits (130), Expect = 4e-24 Identities = 118/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 50 GATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 |||||| ||||| ||| ||||| | || ||||| | | |||||| |||||||||| Sbjct 118041 GATCTAGCCATGAGTAGGTTGAAGAGAGCTCTAACAGGACTTGGAGGACCGAACCCACGT 118100 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||| | ||||| |||||||| | ||| |||||||||||||| || ||| ||| | | Sbjct 118101 ATGTGGCAAAATACGGGGATGACTTATGGCTAGGGGTGAAAGGCCAACCAAGATTGAATA 118160 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||||||| ||| ||||| |||||| |||| Sbjct 118161 TAGCTGGTTTTCTGCGAAATCTATTTCAGTAG 118192 >seq608 Length=53201 Score = 109 bits (120), Expect = 2e-21 Identities = 312/474 (66%), Gaps = 33/474 (7%) Strand=Plus/Minus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | |||||||| |||||||| ||||| ||| ||||||| |||| Sbjct 25474 GTCACTGCTTATGGACCCGAACTTGGGTGATCTATCCATGACCAAGATGAAGCATCGGTG 25415 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || |||||||||||||| ||| |||||||| ||| | ||||||| ||||| | | Sbjct 25414 AAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTGG 25355 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 |||||||| || | ||||| || || |||||||| |||||| || || | Sbjct 25354 GGGTGAAATGCCACTCAAACCCAGAGCTAATTGGTTCTCCCCGAAATGCGTTGAG---GC 25298 Query 202 GCCTCAA--GTATCACCATC-GGGGGTAGAGCACTGTTATGG-CTAGGGGGTCATTGCGA 257 || ||| | | |||| |||||| |||||| || ||| ||| | | ||| Sbjct 25297 GCAGCAATTGACTGGACATCTAGGGGTAAAGCACTATTTTGGTGCAGGCCGCGAAAGCG- 25239 Query 258 CTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCGG----- 304 |||||| | |||||||| |||| | | ||| | || || Sbjct 25238 -GAACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAAGGGTCAAG 25180 Query 305 ------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 ||| || ||||| | |||| | | | ||||||| || || ||||| | Sbjct 25179 GTTGACTAGTAAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCA 25120 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAA-GTCTGATTGCTAAGACA 417 || |||||| ||| ||||||| ||| ||| | ||| ||| || | || ||||| Sbjct 25119 CCAACTAAGGACCCTAAATGACCGCTTAGTGA---TAAAGAAGGTAGGGGTGTAGAGACA 25063 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 ||||| | ||| || | |||||| ||| | || ||||||||||||| |||||| Sbjct 25062 GCTAGAAGGTTTGCCTAGAAGCAACCA-CCCTTGAAAGAGTGCGTAATAGCTCA 25010 >seq9095 Length=108482 Score = 100 bits (110), Expect = 1e-18 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| | |||||||| |||| | ||||| |||||||| ||||| | Sbjct 32664 TAACAGGCCTTGGAGGACTGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCT 32605 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTT 194 ||||||||||||| || ||| | ||| |||| ||||| || ||||| |||||| Sbjct 32604 AGGGGTGAAAGGCCAACCAAGATCGGATATAGTTGGTTTTCCGCGAAATCTATTT 32550 >seq38807 Length=2803 Score = 80.6 bits (88), Expect = 9e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 || ||||||||||| ||| |||||||| |||||| ||||| |||| ||||||||||| Sbjct 2791 TGAAGGTCCGAACCGACTGATGTTGAAGAATTAGCAAATGAGTCGTGGTTAGGGGTGAAA 2732 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT 198 || | | ||| | | |||||||||||| || ||| | || |||| Sbjct 2731 TGCCACGCGAACCTAAAGCTAGCTGGTTCTCCCCAAAATGTGTTAAGGT 2683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688921524224