Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq113 129 1e-27 seq5932 120 6e-25 seq6698 93.3 8e-17 seq40155 77.0 6e-12 >seq113 Length=48730 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 16851 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 16910 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 16911 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 16963 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 16964 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 17020 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||| ||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 17021 AGCCAGAGGAAAATAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 17080 Query 249 CCT 251 ||| Sbjct 17081 CCT 17083 >seq5932 Length=82879 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 63097 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 63038 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 63037 GAGTT-GAAAATAAGTGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAG 62985 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 62984 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 62928 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 || ||||||| ||| ||| | ||||||| | |||||||||||||||||||| || Sbjct 62927 AGGCAGAGGAAAATAAAGCAAAAGCGATTCCCGTACTAGTGGCGAGCGAAATGGGAGCAG 62868 Query 249 CCT 251 ||| Sbjct 62867 CCT 62865 >seq6698 Length=71481 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| |||| |||| || ||| ||||||||| ||||||| ||||||| | Sbjct 34736 TGCTAAATCCATTGGTAGGCAAGAGACAACTTGGCGAACTGGAACATCTTAGTAGCTAGA 34677 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||| | | | ||||||| ||||| || ||||||||||||| ||||| Sbjct 34676 GGAAAATAAAGCCAAAGTGATTCCCGTAGTAGCGGTGAGCGAAATGGGAGCAGCCT 34621 >seq40155 Length=8454 Score = 77.0 bits (84), Expect = 6e-12 Identities = 139/199 (70%), Gaps = 11/199 (6%) Strand=Plus/Plus Query 12 TGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGA 71 ||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||| Sbjct 6317 TGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTTGGGGA 6376 Query 72 GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCA 131 || | ||| | | | |||||| ||||| |||||| || |||| ||| | | Sbjct 6377 GTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAAC- 6428 Query 132 TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAG 190 ||| |||||||| ||| || | |||| || ||| || |||||||||||||| ||||| Sbjct 6429 -TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAG 6486 Query 191 CTGCAGGAAAAGAAATCAA 209 | ||||||| ||| ||| Sbjct 6487 CCAGAGGAAAATAAAGCAA 6505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918031207296