Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28]
40,156 sequences; 759,241,194 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq113 129 1e-27
seq5932 120 6e-25
seq6698 93.3 8e-17
seq40155 77.0 6e-12
>seq113
Length=48730
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 16851 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 16910
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 16911 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 16963
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 16964 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 17020
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||| ||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 17021 AGCCAGAGGAAAATAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 17080
Query 249 CCT 251
|||
Sbjct 17081 CCT 17083
>seq5932
Length=82879
Score = 120 bits (132), Expect = 6e-25
Identities = 175/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 63097 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 63038
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 63037 GAGTT-GAAAATAAGTGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAG 62985
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 62984 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 62928
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
|| ||||||| ||| ||| | ||||||| | |||||||||||||||||||| ||
Sbjct 62927 AGGCAGAGGAAAATAAAGCAAAAGCGATTCCCGTACTAGTGGCGAGCGAAATGGGAGCAG 62868
Query 249 CCT 251
|||
Sbjct 62867 CCT 62865
>seq6698
Length=71481
Score = 93.3 bits (102), Expect = 8e-17
Identities = 91/116 (78%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||| ||| ||| |||| |||| || ||| ||||||||| ||||||| ||||||| |
Sbjct 34736 TGCTAAATCCATTGGTAGGCAAGAGACAACTTGGCGAACTGGAACATCTTAGTAGCTAGA 34677
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||| ||| | | | ||||||| ||||| || ||||||||||||| |||||
Sbjct 34676 GGAAAATAAAGCCAAAGTGATTCCCGTAGTAGCGGTGAGCGAAATGGGAGCAGCCT 34621
>seq40155
Length=8454
Score = 77.0 bits (84), Expect = 6e-12
Identities = 139/199 (70%), Gaps = 11/199 (6%)
Strand=Plus/Plus
Query 12 TGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGA 71
||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||||
Sbjct 6317 TGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTTGGGGA 6376
Query 72 GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCA 131
|| | ||| | | | |||||| ||||| |||||| || |||| ||| | |
Sbjct 6377 GTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAAC- 6428
Query 132 TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAG 190
||| |||||||| ||| || | |||| || ||| || |||||||||||||| |||||
Sbjct 6429 -TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAG 6486
Query 191 CTGCAGGAAAAGAAATCAA 209
| ||||||| ||| |||
Sbjct 6487 CCAGAGGAAAATAAAGCAA 6505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918031207296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |