Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1768 183 1e-43 seq5567 179 1e-42 seq5932 168 2e-39 seq40155 136 1e-29 seq5132 136 1e-29 seq6817 122 3e-25 seq8528 114 4e-23 seq11980 107 7e-21 seq608 102 3e-19 seq12479 98.7 3e-18 seq37718 82.4 3e-13 seq8385 75.2 4e-11 >seq1768 Length=251763 Score = 183 bits (202), Expect = 1e-43 Identities = 293/415 (71%), Gaps = 23/415 (6%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 245601 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 245659 Query 136 GGCACTGTCCC---CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || || |||||| |||| | || Sbjct 245660 CGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 245719 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 245720 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 245764 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 ||||||| || | | || || | | |||||||||| ||||| | ||||||||| Sbjct 245765 ATCCTACGCATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 245824 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 245825 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 245884 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 245885 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 245944 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| Sbjct 245945 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 245999 Score = 183 bits (202), Expect = 1e-43 Identities = 293/415 (71%), Gaps = 23/415 (6%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 248988 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 249046 Query 136 GGCACTGTCCC---CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || || |||||| |||| | || Sbjct 249047 CGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 249106 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 249107 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 249151 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 ||||||| || | | || || | | |||||||||| ||||| | ||||||||| Sbjct 249152 ATCCTACGCATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 249211 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 249212 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 249271 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 249272 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 249331 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| Sbjct 249332 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 249386 >seq5567 Length=223943 Score = 179 bits (198), Expect = 1e-42 Identities = 187/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||| || | | || || | | |||||||||| ||||| | Sbjct 170872 CTCCCACCTATCCTACGCATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCA 170931 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 170932 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 170991 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 170992 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 171051 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 171052 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 171111 Query 480 AATT 483 ||| Sbjct 171112 CATT 171115 >seq5932 Length=82879 Score = 168 bits (186), Expect = 2e-39 Identities = 391/579 (68%), Gaps = 29/579 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 60723 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 60782 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 60783 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 60841 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 60842 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 60901 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| ||||||| | | || || | |||| | Sbjct 60902 TAGCTCTTCCAGAGTGGTATCTCACTGACGACTCGGGCCCCCCCCGGAGGGGGGCCT--T 60959 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | | | | ||||||| || | || | || || |||||| ||| | | |||||| Sbjct 60960 CTTCGCCCTCCACCTAAGCTGCGCAGGAAGGCCCAAA-GCCAATCCCAGGGAACAGTGAA 61018 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| || | | ||||||| || | | ||| Sbjct 61019 GCTTCATAGGGTCTTTCTGTCCATGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 61078 Query 354 TCACCGGGCCTGTGGTTGAGAC--------AG-CAGGGG--AG-TCGTTACGCCATTCGT 401 |||||| | || | ||| | || ||| | || |||||||||| ||||| Sbjct 61079 TCACCGAGTCTCTCTCCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGT 61138 Query 402 GCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACC 461 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 61139 GCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGATTGTTATAGTTACGGCT 61198 Query 462 GCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCT 521 || ||| ||||||||||| | || | ||| || || | | |||| | Sbjct 61199 GCTGTTCACTGGGGCTTCGGTCGCCAG-CTC-----CCCTGTCATCAGGTCACCAACTTC 61252 Query 522 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| |||||||||||| ||||||||||||| || |||| Sbjct 61253 CTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATAC 61291 >seq40155 Length=8454 Score = 136 bits (150), Expect = 1e-29 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 2992 TCGTTACGCCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 2933 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || ||||||| || ||| ||| || || Sbjct 2932 CGTTATAGTTACGGCCGCCGTTCACCAGGGCTTCGGTT-GCCGGCTC-----CCCTGTCA 2879 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 2878 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 2824 >seq5132 Length=261752 Score = 136 bits (150), Expect = 1e-29 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||| ||| | || | |||||||| ||| ||||||| Sbjct 193056 GCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTTGGAGACAGCGGGGCAGTCGTT 192997 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 || |||||| |||||||| | ||| || ||||||||||||||||||||||| |||| Sbjct 192996 ACACCATTCATGCAGGTCACTATTTATGCGTCAAGGAATTTCGCTACCTTAGGACCGTTA 192937 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||| ||| | |||||||| ||| Sbjct 192936 GAGTTACCACCGCCATTTCCCGGGGCTTCCATT 192904 >seq6817 Length=125852 Score = 122 bits (134), Expect = 3e-25 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||||||| | | | |||||||||||| ||||||||| ||| | |||||||||| Sbjct 83280 AATTTCACCGGGTCCACGTTGGAGACAGCAGGGCAGTCGTTACACCAATTGTGCAGGTCG 83339 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| || ||||||||||| |||||||||| |||| |||||| |||| ||||| Sbjct 83340 TTACTTATGTGATAAGGAATTTCGTTACCTTAGGACCGTTAGAGTTACTGCCGCTGTTTA 83399 Query 470 CTGGGGCTTCAATT 483 | ||||||| ||| Sbjct 83400 C-CGGGCTTCCATT 83412 >seq8528 Length=37810 Score = 114 bits (126), Expect = 4e-23 Identities = 105/130 (81%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| | || | ||||||||| | || |||||||||| ||| ||| ||||| Sbjct 30407 ATTTCACCGAGTCTCTCTTTGAGACAGT-GCCCAGATCGTTACGCCTTTCATGCGGGTCG 30349 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||||||| ||| ||||||||| |||||||||||| ||||||||||| | ||||| | Sbjct 30348 GAACTTACTCGATAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGATTTCCGTTCA 30289 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 30288 CCGGGGCTTC 30279 >seq11980 Length=9774 Score = 107 bits (118), Expect = 7e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||||| || ||||| ||||| | |||||||||||||||||||||| |||||||||||| | Sbjct 489 GTTACACCTTTCGTACAGGTTGTAACTTACCCGACAAGGAATTTCACTACCTTAGGATTG 430 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| | | || || ||| ||||||| Sbjct 429 TTATAGTTACAATCACCATTCACTAGGGCTTC 398 >seq608 Length=53201 Score = 102 bits (112), Expect = 3e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| | | |||||||||||||||||||||||||||||||| ||||||| Sbjct 24168 TCGTTACGCCTTTCATCCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATCTTAGGAC 24227 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||| || || | |||||| Sbjct 24228 CGTTATAGTTACGGTCGCTATTCACCGAGGCTTC 24261 >seq12479 Length=7108 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||| | Sbjct 5331 TCGTTACGCTTTTCGTGCAAGTTGGAACTTACCCAACAAGGAATTTTGCTACCTTAAAAC 5272 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||| | | |||| ||| |||||| ||||| || Sbjct 5271 CGTTATAGTTACAGCTGTCGTTCACTAGGGCTTTGGTTACCGGC 5228 >seq37718 Length=2239 Score = 82.4 bits (90), Expect = 3e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||||| || |||||||| |||||||||| ||||||||||||||||| || | Sbjct 1150 TCATTACGCCTTTTGTGCAGGTAAGAACTTACCCAACAAGGAATTTCGCTACTGTAAAAC 1091 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||| | || ||| ||| || ||||| Sbjct 1090 AATTATAGTTACGATCGTTGTTCACTAGGACTTCA 1056 >seq8385 Length=42710 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||||| || ||| |||||| |||||||| |||||||||||||||||||||||||| | Sbjct 37494 GTTACACCTTTCATGCAGGATGGAACTTATGTGACAAGGAATTTCGCTACCTTAGGATAG 37435 Query 448 TTAT 451 |||| Sbjct 37434 TTAT 37431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701716384256