Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5932 122 2e-25 seq113 113 1e-22 seq23811 93.3 9e-17 >seq5932 Length=82879 Score = 122 bits (134), Expect = 2e-25 Identities = 196/280 (70%), Gaps = 20/280 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 66548 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCATCAT-----------T 66596 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 66597 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 66649 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | || |||| || || |||||| || ||||| |||||||||||||||||| Sbjct 66650 GGCATTGCCCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 66709 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC-CCTATCCA 239 |||||||| |||||||||| | ||| ||||| || | ||||||| ||||| ||| | Sbjct 66710 GAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTC-GAACCAGCTACTGA 66768 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | | || ||| || || || | || |||| ||||| Sbjct 66769 TCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 66808 >seq113 Length=48730 Score = 113 bits (124), Expect = 1e-22 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 6795 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 6854 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 6855 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 6914 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| Sbjct 6915 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 6969 >seq23811 Length=815 Score = 93.3 bits (102), Expect = 9e-17 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||| || |||| ||||| ||||| || |||| | | ||| | || || Sbjct 638 AAAAGAAATTCACAACTCGTAGG-CCTTCTATCTCCACGTGGCATTGCTTTGTTAGGCTT 580 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| || ||||| |||||||||||||||||||||| | | | ||||||||| Sbjct 579 TCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCTGTGTCTCAG 520 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACC-CCTATCCATCGTAGGCTAGGTGGGCCGT 259 | ||| ||||| | | ||||||| ||||| |||| ||| | | || ||| || | Sbjct 519 TCCCAGTGTGGCTAATCATCCTCTC-GAACCAACTATTGATCATCGCCTTGGTAAGCTAT 461 Query 260 TACCCCGCCTACTACCTAAT 279 | || | || |||| ||||| Sbjct 460 TGCCTCACCAACTAGCTAAT 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068370812672