Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10149 107 3e-21 seq6118 107 3e-21 seq4931 107 3e-21 seq4077 102 1e-19 seq2569 102 1e-19 seq2856 93.3 7e-17 seq10950 89.7 8e-16 seq631 82.4 1e-13 seq1160 78.8 2e-12 seq10593 77.0 5e-12 seq4972 73.4 6e-11 seq1196 73.4 6e-11 >seq10149 Length=34148 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2451 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2508 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 2509 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2568 Query 121 GAA 123 ||| Sbjct 2569 GAA 2571 >seq6118 Length=43452 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 39726 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 39783 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 39784 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 39843 Query 121 GAA 123 ||| Sbjct 39844 GAA 39846 >seq4931 Length=248149 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 86874 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 86817 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 86816 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 86757 Query 121 GAA 123 ||| Sbjct 86756 GAA 86754 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 73402 GTACGAAAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 73345 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | ||||||||||| |||||||||| |||||||||||| Sbjct 73344 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTTTAAGTCAGAATC 73292 >seq4077 Length=67374 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | || || ||| || |||| Sbjct 34005 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 34062 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 34063 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 34122 Query 121 GAA 123 ||| Sbjct 34123 GAA 34125 >seq2569 Length=124055 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | ||||||||| | ||| || ||| || |||| Sbjct 7690 GTACGAGAGGAACCATTGA-TTC-GCATAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7747 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||| |||||||||||||||||| || | Sbjct 7748 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 7807 Query 121 GAA 123 ||| Sbjct 7808 GAA 7810 >seq2856 Length=133587 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | || || ||| || |||| Sbjct 21836 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCACGCTTGGTTGAAAAGCCAGT 21779 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||| ||||| | ||||||||||| |||| ||||||||||||||||||| || | Sbjct 21778 GGCGCGAAACTACCGTGCGCTGGATTATGACTGACCGCCTCTAAGTCAGAATCCGGGCTA 21719 Query 121 GAA 123 ||| Sbjct 21718 GAA 21716 Score = 91.5 bits (100), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||| |||| || ||| | ||||||||| | || || ||| || |||| Sbjct 44239 GTACGAGAGGTACCGTTGA-TTC-GCATAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 44182 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAAC-GCCTCTAAGTCAGAATCCATGCC 119 | ||||||||||| | ||||||||||| |||||| |||||||||||||||||| || Sbjct 44181 GGTGCGAAGCTACCGTGCGCTGGATTATGACTGAACAACCTCTAAGTCAGAATCCAGGCT 44122 Query 120 AGAA 123 |||| Sbjct 44121 AGAA 44118 >seq10950 Length=49427 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||| | | ||| || ||| || |||| Sbjct 1106 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGTTCATCGCGCTTGGTTGAAAAGCCAGT 1163 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||| | |||||||||| || || ||||||||||||||||||| || | Sbjct 1164 GGCGCAAAGCTACCGTGCCCTGGATTATGACTAAATGCCTCTAAGTCAGAATCCAGGCTA 1223 Query 121 GAA 123 ||| Sbjct 1224 GAA 1226 >seq631 Length=233705 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| | | ||||||| ||| || ||| || |||| Sbjct 5506 GTACGAGAGGAACTGTTGA-TTC-GCACAATTGGTCACCGCGCTTGGTTGAAAAGCCAGT 5449 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | ||||||||||| | |||||||||||| || ||||||||||||||| ||| Sbjct 5448 GGCGCGAAGCTACTGTGTGCTGGATTATGACTAAACGCCTCTAAGTCATAAT 5397 >seq1160 Length=85824 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| ||||||| |||| | ||||||||||| |||||||||||||||||||||||| | Sbjct 2562 AGTGGCGCGAAGTTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG 2621 Query 118 CCAGAA 123 | |||| Sbjct 2622 CTAGAA 2627 >seq10593 Length=48225 Score = 77.0 bits (84), Expect = 5e-12 Identities = 97/127 (76%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| | || ||| | | |||| || ||| | || ||| || |||| Sbjct 31744 GTACGAGAGGAATCATTGA-TTC-GCACAATTAGTCATTGGGCTTGGTTGAAAAGCCAGT 31801 Query 61 GCCGCGAAGCTACCATCTGCT--GGATTATGGCTGAACGCCTC-TAAGTCAGAATCCATG 117 | ||||||||||| | |||| |||||||| ||||||||||| ||||||||||||| | Sbjct 31802 GGCGCGAAGCTACTTT-TGCTCTGGATTATGACTGAACGCCTCTTAAGTCAGAATCCGGG 31860 Query 118 CCAGAAC 124 | ||||| Sbjct 31861 CTAGAAC 31867 >seq4972 Length=50394 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | |||||||| | || |||||||||||||||||||| Sbjct 15808 AGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTTTTACTAAACGCCTCTAAGTCAGAATC 15749 Query 114 CATGCCAGAA 123 | || |||| Sbjct 15748 CGGGCTAGAA 15739 >seq1196 Length=206335 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||||| |||||||||| |||| | |||||||||||||||| Sbjct 64560 AGCCAGTGGCGCGAAGCTACCATGCACTGGATTATGACTGAGCACCTCTAAGTCAGAATC 64619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818881321984