Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12080 168 5e-37 >seq12080 Length=19512 Score = 168 bits (186), Expect = 5e-37 Identities = 571/878 (65%), Gaps = 26/878 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || || |||| ||| || ||| |||||||| ||||| || || || |||| Sbjct 7971 TGTTTCCAATTCAGTACCCGGAGATATGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCT 8030 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||| | ||| ||| | | ||||||| || | || Sbjct 8031 GGACCGCCGAGGAGGTCGATCTCTCCGGCGACGTACGTCACTGGGAAAACCTAAC---CG 8087 Query 61184 GTGAACAA---CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || ||||| | || ||| | || ||||| ||||| || ||||| |||| Sbjct 8088 ATGACGAGAGGCACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 8147 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 | |||||| | || | ||| | ||||||| || || |||||||| || || Sbjct 8148 TTTTGGAGAATCTGGCGGGGAGGTTCATGAAGGAGGTCCAGGTTTCGGAGGCTCGCGCTT 8207 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 |||| |||||||||||||| || ||||| ||||||| || ||||||||| | | ||| Sbjct 8208 TCTATGGCTTCCAGATTGCGATCGAGAACATCCACTCCGAAATGTACAGTCTCTTGCTCG 8267 Query 61361 ATACGTACATCAGGGA-GCGGGCG-GAACGTGAA-CGATTGTTCAATGCCATCGAGACGA 61417 | || || |||| ||| ||| || ||| ||| || ||||| | || || ||||| Sbjct 8268 AGACCTATATCAAGGACTCGGCCGAGAA---GAACCGGCTGTTCCACGCGATGGAGACCG 8324 Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | || ||| | ||| || || |||||| | |||||| || ||| | Sbjct 8325 TTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATC-----GACGGCGGAGA 8379 Query 61478 --CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATC 61535 | || | || | | | || || || ||||| || | || ||| ||| Sbjct 8380 ATCGTTCGCGGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAG 8439 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 || ||| || |||||| | || || || || | |||||||| | |||||| ||| Sbjct 8440 CTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAA 8499 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACG 61655 |||||||| || || ||||| || | || || ||||| || |||| | || Sbjct 8500 CGAGTTGATCTCGCGAGACGAAGGTCTCCACTGCGATTTCGCGTGCCTGCTCT----ACA 8555 Query 61656 CTATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAA 61714 || ||| | | || | | |||||||| ||| | || || || || ||||| Sbjct 8556 CTCTCTTGCGCAAGAAGCTGAGCGAGGAGCGCGTGAAGGCTATCGTCCGCGACGCGGTGG 8615 Query 61715 CTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTG 61774 ||| || ||| ||| || ||||| ||||| | | | | || ||||| | | Sbjct 8616 ATATAGAGAGGGAGTTTGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCG 8675 Query 61775 GACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGA 61834 || ||| ||||| || || ||||| || || | || |||| || ||||| || Sbjct 8676 ATCTGATGAGCCAGTACATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGTTGGG-GTGT 8734 Query 61835 AGC-GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 || ||||| || | ||||||||||||| ||||| |||||||| || | || Sbjct 8735 GGCAAAATCTACGATGTTCAGAACCCATTTGATTGGATGGAACTGATTTCGTTGCAAGGA 8794 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| || ||||| | || || || || || Sbjct 8795 AAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCA 8832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397373429723840