Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5990 565 3e-156 seq40156 554 5e-153 seq9596 206 3e-48 seq13182 100 3e-16 seq5685 100 3e-16 seq2250 95.1 1e-14 seq13284 93.3 5e-14 seq4408 93.3 5e-14 seq4685 89.7 6e-13 >seq5990 Length=34798 Score = 565 bits (626), Expect = 3e-156 Identities = 695/947 (73%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 159845 GGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 159903 || ||||| || || |||||||||| || | ||| | |||||| |||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 159904 CGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTC 159963 || ||||| ||| |||| || ||||| || ||||| || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 159964 ACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGG 160023 || | ||||| || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 160024 TCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGG 160083 | ||||||| || || || |||||||| | || | || || ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 160084 TCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGA 160143 ||||| | || | || | |||||| | | || | | |||||||||| ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 160144 GTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCC 160203 ||||||||| || |||||| |||||||| || ||||| ||||||||| || ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 160204 AGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGA 160263 ||| |||| ||| ||||||| ||| | | || ||| | ||||| || || || || Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 160264 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACA 160323 | ||||||||| || || ||||||||||| |||| ||| |||||||||| || || || Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 160324 CAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 160383 ||| ||||||||||| || || |||||| | ||||| ||||| ||||||| || || || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 160384 GTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAAC 160443 ||| |||||||||||| | |||| ||||||||| | |||| || || ||||||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 160444 TGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGC 160503 ||| || ||| | ||||||| ||||||||||||||||| ||||| || ||||| || Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 160504 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTC 160563 || ||||| || || || || ||||| ||||||||||| || ||||| || || || Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 160564 TCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGT 160623 | | || |||||||| || ||||||||||| || || |||||||||||||| | ||| | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 160624 TTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCA 160683 || ||||| ||||| | ||||||||||| |||||||| || | | || | || Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 160684 AGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGT 160743 ||| || || | || || ||||| | | |||| || ||| || || |||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 160744 CATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTG 160790 ||||| || ||||| ||||| || |||||||| ||| | ||| ||| Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 554 bits (614), Expect = 5e-153 Identities = 725/994 (73%), Gaps = 7/994 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| ||||||| | || Sbjct 5396 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCG 5455 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| |||| || || || || | || |||||||| |||||| | || Sbjct 5456 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACACATGGATTGGCG 5515 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | || || ||||| || | | || ||||||||| ||||| ||| | Sbjct 5516 AGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCGGCAGTTTCTACTCCTGCTAATAG 5574 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | || ||| || || || || |||||||| || || ||||| ||||| | | Sbjct 5575 TTTAGCACACTCT-TTGTTGTTACTATGGGGTCCAGAAGCACAAGGAGATTTTACTCGTT 5633 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || || |||| |||||| || |||||||| ||||||| || || | Sbjct 5634 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAG 5693 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901 | |||||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| Sbjct 5694 GTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 5752 Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961 || || ||||||| ||| |||||||||||||| || || || || ||||| || || Sbjct 5753 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGT 5812 Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021 ||||| |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 5813 CAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTATATTTCGATTCATCCTC 5872 Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGT 162081 || | ||||| || || |||||||| | || || || || |||||||| || || ||| Sbjct 5873 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCGGGT 5932 Query 162082 ATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTAC 162141 | ||||| | ||| | || | |||||||| |||| || || ||||| || | | Sbjct 5933 GTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTT 5992 Query 162142 CAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACT 162201 |||||||||| |||||||| ||| |||||| || | || |||| ||| || ||| Sbjct 5993 GAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACT 6052 Query 162202 TACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAAT 162261 || || ||||| || || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 6053 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 6112 Query 162262 AAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCT 162321 || |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 6113 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 6172 Query 162322 ATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATT 162381 | || | | || | ||||| || || || || || ||||| || |||||||| || Sbjct 6173 CTTGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAATC 6232 Query 162382 CGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAA 162441 ||||||||||| |||||||||||||| || ||||||||||| ||||| || || |||||| Sbjct 6233 CGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGAA 6292 Query 162442 GGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAG 162501 || ||||||| ||| |||| | ||||| || ||||| ||| || ||||||||||| Sbjct 6293 GGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6352 Query 162502 GAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || ||||| || | || ||||| || | ||||| Sbjct 6353 GAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 6385 >seq9596 Length=34882 Score = 206 bits (228), Expect = 3e-48 Identities = 222/290 (77%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 162248 TTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTC 162307 |||||||| ||||| |||||||| |||||||||||| | || || || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 162308 TCTGGACAAGTTCTATCGGTATTATTGGAC-TCGCTCTTAATCTTCGTGCTTACGACTTT 162366 | |||| ||| || | || | || | ||| | ||||| || || || || || ||||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 162367 GTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAAT 162426 || |||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 162427 ATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAAC 162486 || || || |||||||| ||||||| ||| |||| | ||||| || ||||| ||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 162487 TTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGGT 162536 || ||||||||||||| ||||| || | || ||| | || | |||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCT-TTAATGGT 5646 >seq13182 Length=14344 Score = 100 bits (110), Expect = 3e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 162357 TTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTA 162416 ||| |||||||| ||| |||| || | |||| || |||||||||||||| | ||||| Sbjct 7670 TTATGACTTTGTTTCTTAGGAAATCCATGCATTAGAAGATCCTGAATTTGAGATGTTCTA 7611 Query 162417 CACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACC 162476 |||||| ||||| | || ||||||||| || |||| || ||||| | ||| | | Sbjct 7610 CACCAAAAATATTAT-TTAAATGAAGGTATTTGTGCTTGTATGGCAACTCAAGATTAGCT 7552 Query 162477 GCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| | || || |||||| |||||| ||||| ||| Sbjct 7551 TCATAAAAAACTTATATTCCTTGAGGAGGTTCTACCT 7515 >seq5685 Length=160749 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 160556 TCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCC 160615 || || ||| | || |||||||| ||||||||| | || || || |||||||| || Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 160616 CTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTG 160675 | ||| | || ||||| ||||| | ||||||||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 160676 GACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGC 160735 || | ||||| || | || || | || || | |||| || ||| || || Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 160736 ATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTG 160790 | |||||| |||| || ||||| ||||| || |||||||| ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq2250 Length=25732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 162363 CTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAA 162422 |||||| ||||| || ||||||||||| || |||||| ||||||| || ||||||||||| Sbjct 5401 CTTTGTTTCTCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCTACACCAA 5460 Query 162423 GAATATCCTCTTGAATGAAGGTCTTCGTGC 162452 ||||| || || |||||||| || |||| Sbjct 5461 AAATATTCTTTTAAATGAAGGCATTAGTGC 5490 >seq13284 Length=8732 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 161800 CTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAG 161859 || |||| |||||| || ||||| | |||||| || || || |||||| | ||||| Sbjct 2469 CTGTGGACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAA 2410 Query 161860 TTTGAACTTGCTC-GTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCC 161918 ||||||||||||| ||| || | | || ||||| ||||| || || |||| || ||| Sbjct 2409 TTTGAACTTGCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCC 2351 Query 161919 TATTGCTGTTTTTGT 161933 |||||||||||||| Sbjct 2350 AATTGCTGTTTTTGT 2336 >seq4408 Length=147402 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || |||| || | ||||| | ||||| ||||| || || || || Sbjct 127740 GATGATGCTTACATCCTAGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCTTATTCATGC 127799 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||| ||||||||||| |||||||| ||||| | || || | ||||| |||||| Sbjct 127800 AGGGCTGGGGCTTGCTCTACCTGTGCTGGGAAGATGGTGACAGGCTCAGTAGACCAATCT 127859 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||| ||||| ||||| | | ||| ||||| ||||| || || || Sbjct 127860 GATGGTTCATTCCTTGATGAAAATCAAATGAAGGAAGGTTTTGTGCTGACTTGTGTCGCG 127919 Query 161140 TATCCCACT 161148 || || ||| Sbjct 127920 TACCCAACT 127928 >seq4685 Length=19895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 160255 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCA 160314 ||| || ||| |||||||||||| || ||||||||||| |||| || |||||||||| Sbjct 6876 TTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCA 6817 Query 160315 AGCAGAACACAATATCCTTATGCATCCGTTCCACATG 160351 | || ||||| ||||||||||| || || |||||| Sbjct 6816 GGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551099236816800