Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5990 522 3e-143 seq40156 513 2e-140 seq9596 141 1e-28 seq6232 116 5e-21 seq13284 87.8 2e-12 seq2250 82.4 1e-10 >seq5990 Length=34798 Score = 522 bits (578), Expect = 3e-143 Identities = 712/983 (72%), Gaps = 12/983 (1%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| ||||| | ||| | | | |||| ||| || | || ||||| ||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||||| ||| | | | ||||| |||| || || | || || | ||| | | Sbjct 10073 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTACTC 10130 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || || || |||||||| || || ||||| || |||| || || | || ||||| | Sbjct 10131 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 10190 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 | || || |||||||| || | ||| | || || || ||| ||||||| ||||| | Sbjct 10191 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAA 10250 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| | || | ||||| ||| | ||||| || ||||||| | || | | Sbjct 10251 TATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTG 10310 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTT 189205 | | |||||| | | || | || || | | ||||||| |||||||||||| || Sbjct 10311 TTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCATGAGTGGGAACTTAGTT 10367 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCA 189264 |||||| |||||||| |||||||| ||| |||| || || || || ||||| | ||| Sbjct 10368 TCCGTCTAGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGATGCA 10426 Query 189265 TCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTG 189324 | || || || || | ||||| |||||||||| || ||||||| ||||| | Sbjct 10427 ACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTA 10486 Query 189325 GGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 189384 || || ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||| Sbjct 10487 GGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 10546 Query 189385 CACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATG 189444 ||||| || |||||| | || || || ||||| |||| ||||| || ||| || ||| Sbjct 10547 CACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATG 10606 Query 189445 CATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAAC 189504 ||||||| | || || ||| || | | |||||||| |||| || || ||| Sbjct 10607 CATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAC 10666 Query 189505 TATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATAT 189564 | ||||||| || || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 10667 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 10726 Query 189565 TTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTC 189624 || || || | || ||||||||||| |||||||| || ||||| | || |||||| Sbjct 10727 TTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 10786 Query 189625 CTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCA 189684 || || || ||||| || || ||||||||||| || || | || ||||||| ||||| Sbjct 10787 CTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 10846 Query 189685 TTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTG 189744 |||||| | ||||| ||||| ||||| ||||| | ||||| ||||||||| ||| | Sbjct 10847 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATT 10906 Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 || || ||||| | || | || |||||| |||||||||||||| |||||||| ||| Sbjct 10907 AATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 10966 Query 189805 AACGCTCACAACTTCCCTCTTGA 189827 || ||||| || |||||||| || Sbjct 10967 AATGCTCATAATTTCCCTCTAGA 10989 >seq40156 Length=57058 Score = 513 bits (568), Expect = 2e-140 Identities = 728/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || ||||| |||||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||||||| |||| | || || ||| |||| || || || ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| || || ||| | || ||| || | || || ||| | || | | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-T 5544 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || ||||| || || || |||||| || | | | || ||| | | |||| ||||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 5604 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||| ||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 5605 TCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5664 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || |||||||| ||||||| ||||| || |||||| | ||||| |||||||| || || Sbjct 5665 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 5724 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | || ||||| ||||| || || ||||||| ||| || |||||||||| Sbjct 5725 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 5783 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || || || || || || ||||| || |||||||||| ||||| || | Sbjct 5784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTG 5843 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 |||| ||||| || || || ||| ||||||| || || || || ||||| ||||| ||| Sbjct 5844 GTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5903 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | |||| | || || || | || || | Sbjct 5904 ACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTC 5963 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||||| || ||||| |||||||| | |||||||||||| ||||| || || | Sbjct 5964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTG 6023 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| |||||| || ||||| |||||||| || ||||| || |||| Sbjct 6024 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 6083 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||||||||| ||||| || ||||| | ||||| |||||||||||| | |||| Sbjct 6084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 6143 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTT-GCTCTCAACCTT 190823 | || || | ||| | |||| | | | || | || | | ||| ||||| ||||| Sbjct 6144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT 190883 || || |||||||| || || || || ||| | ||||| |||||||| || || ||||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 190884 TTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGAT 190943 || ||||| |||||||| ||||| |||||||| ||||| | ||| |||| || ||| Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 190944 CAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || ||||| || || |||| || || || || | || | || |||||||| Sbjct 6323 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq9596 Length=34882 Score = 141 bits (156), Expect = 1e-28 Identities = 195/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 190731 AATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCT 190790 ||||| | ||||| |||||||||||| | ||||| || || | ||| | |||| | Sbjct 5370 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 5429 Query 190791 TCCATCGGTATTATTGGTCTT-GCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGA 190849 | | || | || | | ||| ||||| ||||| || || |||||||| || || || || Sbjct 5430 GCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGA 5488 Query 190850 GATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAA 190909 ||| | ||||| |||||||| || || ||||| || ||||| |||||||| ||||| || Sbjct 5489 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAA 5548 Query 190910 TGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCC 190969 |||||| ||||| | ||| |||| || ||||| || ||||| || || |||| || Sbjct 5549 TGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 5608 Query 190970 AGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || || | || | || ||| |||| Sbjct 5609 TGAGGAGGTTCTACCCCGTGGAAACACTCT 5638 >seq6232 Length=104065 Score = 116 bits (128), Expect = 5e-21 Identities = 189/267 (71%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930 ||| | |||||||| || | || ||||| || || ||||||||||||| ||| | | | Sbjct 82873 ACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTAC-CTTATTGAC 82815 Query 188931 TGCAACCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989 | || | |||| || || | || || | ||||| || || || || |||||||| | Sbjct 82814 CGTAA-CTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTA 82756 Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049 | || ||||| || |||| || || | || ||||| || || || |||||||| || Sbjct 82755 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTA 82696 Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109 | ||| | || || || ||| | ||||| ||||| || |||||||| | || | | Sbjct 82695 TTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTG 82636 Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTT 189136 |||| ||| | ||||| | |||||||| Sbjct 82635 ATGAATGGTTATACAATGATGGTCCTT 82609 >seq13284 Length=8732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/250 (69%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 190163 TCTTA-CAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT 190221 ||||| | ||||| || || || ||| || || | | | || ||| | | |||| | Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 190222 GGGGTCCTGAATCTCAAGGCGATT----TCGTCAGGTGGATCCAACTTGGGGGACTCTGG 190277 ||||||| || | |||| ||| |||| || || ||| | || | || ||| Sbjct 2519 GGGGTCCAAAAGCATAAGGAGATCGTACTCGTTAG-TGT---CAATTAGGCAGTCTGTGG 2464 Query 190278 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAA 190337 ||||||| || ||||| | |||||| ||||| || |||||| | ||||| |||||| Sbjct 2463 ACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAA 2404 Query 190338 CTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGC 190396 || || | ||| || | | || ||||| ||||| || || |||| || ||| || || Sbjct 2403 CTTGCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGC 2345 Query 190397 TGTTTTTGTT 190406 |||||||||| Sbjct 2344 TGTTTTTGTT 2335 >seq2250 Length=25732 Score = 82.4 bits (90), Expect = 1e-10 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 190828 CTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTT 190887 ||||| |||||| || ||||| || | |||||||||||||| | || ||||| || | Sbjct 5394 CTTATTTCTTTGTTTCTCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCT 5453 Query 190888 ACACAAAAAATATACTTTTGAATGAAGG 190915 |||| |||||||| ||||| |||||||| Sbjct 5454 ACACCAAAAATATTCTTTTAAATGAAGG 5481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633761723544000