Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq5990 677 0.0 seq40156 554 5e-153 seq6232 185 1e-41 seq9596 156 5e-33 seq5685 154 2e-32 seq4685 107 2e-18 seq388 107 2e-18 seq3690 86.0 7e-12 >seq5990 Length=34798 Score = 677 bits (750), Expect = 0.0 Identities = 728/958 (76%), Gaps = 4/958 (0%) Strand=Plus/Plus Query 160604 TCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTG 160663 ||||||| | || ||||| ||||| |||||||||| || | ||| | ||||| |||| Sbjct 10045 TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTG 10103 Query 160664 C-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCG 160722 ||||||| ||| ||| ||||| |||| || ||||| || || ||||| |||||||| | Sbjct 10104 TATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTG 10163 Query 160723 TTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCA 160782 || |||| || || | || ||||| || || || |||||||| || ||||| |||| Sbjct 10164 TTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTG 10223 Query 160783 ACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCT 160842 || || ||| ||||||| ||||| || |||||||||| || ||||||||||| | | Sbjct 10224 CAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTAT 10283 Query 160843 ACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACA 160902 ||||||| |||||||| | || | || | |||||| | | || | || || | Sbjct 10284 ACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 10343 Query 160903 TGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCA 160961 |||||| |||||||||||| | ||| || || |||||||| ||||| ||| |||||| Sbjct 10344 TGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT-TGCTGTTGCA 10402 Query 160962 TATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 161021 ||||| || || ||||||| ||| | ||| || ||| | | ||||| | |||||||| Sbjct 10403 TATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGA 10462 Query 161022 TCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTC 161081 || ||||| |||||||| || || || |||||||| |||||||||||| |||| ||| Sbjct 10463 AGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 10522 Query 161082 CAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTC 161141 ||||| || ||||||||||| |||||||| || |||||||| ||||| |||||||| ||| Sbjct 10523 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 10582 Query 161142 GGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAA 161201 | ||||| || ||| || |||||||||| |||| |||||| || | | ||| Sbjct 10583 GACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAA 10642 Query 161202 ACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTAC 161261 ||||| || || || || ||| | ||||||| || |||||||| ||||| || || Sbjct 10643 ACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAT 10702 Query 161262 AACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAAC 161321 || ||||| |||||||||||||| || || || |||| |||||||| ||| |||||| Sbjct 10703 AATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAAC 10762 Query 161322 AACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACT 161381 || || ||||| || || |||||||| || || |||||||| || ||||||||||||||| Sbjct 10763 AATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACT 10822 Query 161382 GCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATC 161441 || | ||| || ||| ||||| |||||| | || || ||||| |||||||| || | Sbjct 10823 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTA 10882 Query 161442 ATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTT 161501 | ||| |||| || | || | || ||||||||| | || | ||||||||||||||| Sbjct 10883 GTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTT 10942 Query 161502 GGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTG 161559 ||||||||||| ||||| || ||||||||||| || |||||||| || | ||| ||| Sbjct 10943 GGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 554 bits (614), Expect = 5e-153 Identities = 720/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| |||||||| || || | || ||||| ||||||| | || Sbjct 5396 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCG 5455 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| |||| |||||||| ||||| || ||||| || || || | ||| Sbjct 5456 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACACATGGATTGGCG 5515 Query 164037 TCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 |||| | ||| ||| ||| || ||| | || ||||| || || || |||||| | Sbjct 5516 ---AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGTTTCTACTCCTGCTAA 5571 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | || ||| | | |||| |||||||| || | || || || || | | | Sbjct 5572 TAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACAAGGAGATTTTACTCG 5631 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || || ||| ||||||| || ||||||| |||||| || || Sbjct 5632 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAAT 5691 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||||||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 5692 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGC 5751 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332 || || ||||||| ||| |||||||| ||||| || ||||| || || || || || Sbjct 5752 AATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGG 5811 Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392 || ||| ||||||||||||| ||| ||||| ||||| || || || ||||| || | Sbjct 5812 TCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTATATTTCGATTCATCCT 5871 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || ||||||| || ||||| |||||| | ||||| || ||||||||||| ||||| || Sbjct 5872 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCGGG 5931 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | | || | ||| ||||| || ||||||||||||||||||||||| |||||||| || Sbjct 5932 TGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATT 5991 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| ||||||| ||| || || | || ||||||| |||||| || Sbjct 5992 TGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAAC 6051 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 ||| || |||||||| || |||||||| ||||| || || ||||| ||||||| ||| Sbjct 6052 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 6111 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 6112 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 6171 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | |||| | || || || || || || ||||| || || |||||||| || Sbjct 6172 TCTTGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAAT 6231 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | ||||| || ||||||||||||||||||||||| || || || || || | ||||| Sbjct 6232 CCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGA 6291 Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872 ||| | ||||| |||||||| | ||| ||||| || ||| || |||| || || Sbjct 6292 AGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 6351 Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||||| || | || ||||| || ||| Sbjct 6352 GGAGGTTCTACCCCGTGGAAACGCTCTTTAA 6382 >seq6232 Length=104065 Score = 185 bits (204), Expect = 1e-41 Identities = 199/261 (76%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||| || || |||||||||| || | ||| | | ||| Sbjct 82867 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGTAACT 82808 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| ||| ||| |||||||||| || ||||| || || ||||| ||||| Sbjct 82807 -TCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGA 82749 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | || ||||| || || || |||||||| || ||||| | Sbjct 82748 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 82689 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | ||||| ||||| || |||||||||| || |||||||||| Sbjct 82688 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAATG 82629 Query 160838 GCTCTACAATGGTGGTCCTTA 160858 | | ||||||| ||||||||| Sbjct 82628 GTTATACAATGATGGTCCTTA 82608 >seq9596 Length=34882 Score = 156 bits (172), Expect = 5e-33 Identities = 205/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 164620 TTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGAC 164679 ||||||| |||||| |||||||| || ||||||||| | ||||| || || | || Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 164680 TTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTG 164739 | |||| ||| || |||| | ||| | || || || || || || ||||| || | Sbjct 5419 TATGGATGAGTGCTCTTGGAGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTCG 5478 Query 164740 TGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACA 164799 | |||||||| || | ||||| || ||||||||||||||||||||||| || || || | Sbjct 5479 TTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATA 5538 Query 164800 TCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGT 164859 | || | |||||||| | ||||| |||||||| | ||| ||||| || ||| Sbjct 5539 TTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACC 5598 Query 164860 TTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || |||| || ||||| ||||| || | || ||| | || ||| Sbjct 5599 TTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAA 5642 >seq5685 Length=160749 Score = 154 bits (170), Expect = 2e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 161325 TCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCA 161384 || ||||| || || |||||||| || |||||| | || ||||| |||||||| || Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 161385 CTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATG 161444 | ||| || ||| ||||| |||||| | || || ||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 161445 GATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGT 161504 ||| |||| || || | || |||| || ||| || | |||||||||||||||||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 161505 ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTG 161559 | |||||| |||| || ||||||||||| || |||||||| || | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 ||||||| ||| ||| |||||||||| || || || |||||||| ||||||||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGT 161121 |||| ||||||| || ||||||||||| |||||||| || ||||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATGT 6779 >seq388 Length=54843 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 164426 CCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCA 164485 ||| || ||||||||||| ||||| || | | |||| ||||||||| ||||||| ||| Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 164486 TGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTT 164539 |||||| || |||||||||||||| ||||||||| ||| | ||||||| || Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATT 28226 >seq3690 Length=176667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 161472 TGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCT 161531 |||||||| || | || | ||||||||||||||||||||| ||||| || |||||||| Sbjct 116815 TGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCT 116756 Query 161532 CACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 || || |||||||| || | ||| ||| ||| Sbjct 116755 CATAATTTCCCTCTAGACTTAGCTTCTGTTGA 116724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559047245310400