Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq21181 123 1e-26
seq35526 86.0 3e-15
>seq21181
Length=3028
Score = 123 bits (136), Expect = 1e-26
Identities = 99/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 116 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 58
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116
||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||
Sbjct 57 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCG 1
>seq35526
Length=1069
Score = 86.0 bits (94), Expect = 3e-15
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 25 TAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTAC 83
||||||||| |||| |||| || |||||| | ||||||| |||||||| |||||
Sbjct 39 TAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTAT 97
Query 84 GGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| |||||| |||||||||||||| |||||||
Sbjct 98 GGTTGAGACTAGGACGGTATCTGATCATCTTCGA 131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278231049480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |