Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq21181 123 1e-26 seq35526 86.0 3e-15 >seq21181 Length=3028 Score = 123 bits (136), Expect = 1e-26 Identities = 99/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 116 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 58 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 ||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||| Sbjct 57 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCG 1 >seq35526 Length=1069 Score = 86.0 bits (94), Expect = 3e-15 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 25 TAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTAC 83 ||||||||| |||| |||| || |||||| | ||||||| |||||||| ||||| Sbjct 39 TAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTAT 97 Query 84 GGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||||||||||||| ||||||| Sbjct 98 GGTTGAGACTAGGACGGTATCTGATCATCTTCGA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278231049480