Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq35526 129 1e-27
seq62645 104 4e-20
seq58326 87.8 3e-15
seq24886 84.2 4e-14
>seq35526
Length=1069
Score = 129 bits (142), Expect = 1e-27
Identities = 100/118 (85%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260
||||||||| | ||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct 249 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 190
Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
| ||| ||||||| || |||||||||||||||||||||| ||||||||||| ||||
Sbjct 189 CAACTTCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 133
>seq62645
Length=267
Score = 104 bits (114), Expect = 4e-20
Identities = 102/129 (79%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 140 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 199
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | || | ||||| |||||| | ||| || ||||||||
Sbjct 200 GGGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 258
Query 191 TAATAGGGA 199
||| |||||
Sbjct 259 TAACAGGGA 267
>seq58326
Length=432
Score = 87.8 bits (96), Expect = 3e-15
Identities = 91/117 (78%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACG 149
|||||| |||||||| |||| |||| | |||||||||||||| |||| | ||||||
Sbjct 432 AGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATT 373
Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206
| || | ||||| |||||| | ||| || ||||||||||| ||||| ||||||
Sbjct 372 T-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGG 317
>seq24886
Length=2293
Score = 84.2 bits (92), Expect = 4e-14
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260
||||||||| | ||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct 80 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 21
Query 261 CTACTGCGAAAGCGTT 276
| ||||||||||| ||
Sbjct 20 CAACTGCGAAAGCATT 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914607572736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |