Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq35526 129 1e-27 seq62645 104 4e-20 seq58326 87.8 3e-15 seq24886 84.2 4e-14 >seq35526 Length=1069 Score = 129 bits (142), Expect = 1e-27 Identities = 100/118 (85%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| || Sbjct 249 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 190 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | ||| ||||||| || |||||||||||||||||||||| ||||||||||| |||| Sbjct 189 CAACTTCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 133 >seq62645 Length=267 Score = 104 bits (114), Expect = 4e-20 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 140 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 199 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 200 GGGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 258 Query 191 TAATAGGGA 199 ||| ||||| Sbjct 259 TAACAGGGA 267 >seq58326 Length=432 Score = 87.8 bits (96), Expect = 3e-15 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACG 149 |||||| |||||||| |||| |||| | |||||||||||||| |||| | |||||| Sbjct 432 AGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATT 373 Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206 | || | ||||| |||||| | ||| || ||||||||||| ||||| |||||| Sbjct 372 T-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGG 317 >seq24886 Length=2293 Score = 84.2 bits (92), Expect = 4e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| || Sbjct 80 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 21 Query 261 CTACTGCGAAAGCGTT 276 | ||||||||||| || Sbjct 20 CAACTGCGAAAGCATT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914607572736