Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21181 226 1e-56 seq41810 223 1e-55 seq58126 163 1e-37 >seq21181 Length=3028 Score = 226 bits (250), Expect = 1e-56 Identities = 222/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 2085 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 2144 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || | ||| ||| |||||||| | |||| Sbjct 2145 AACCCGTAAGGCGCAAGGAAGCTGATTGG---TAGGATCCCTCACGGGTGCACTACCGAC 2201 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 2202 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 2261 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG-CGGT 641 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || | Sbjct 2262 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGTCGAT 2321 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2322 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2363 Score = 150 bits (166), Expect = 7e-34 Identities = 135/167 (81%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAG-TTGTTT-GGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 || |||||||| | |||||| ||||||||||| | || ||| |||||||| | || || Sbjct 1697 TCTACGAGTCGGGGTTGTTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAG 1756 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||| ||| |||||||||||||| ||||||| | || |||||||||||| || Sbjct 1757 GCTAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGAC 1816 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 1817 TTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 1863 >seq41810 Length=795 Score = 223 bits (246), Expect = 1e-55 Identities = 220/281 (78%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| |||||| | Sbjct 406 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATTTGTGCGAGTCAATGGGTGAGTA 347 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||| | | || || ||| ||| || | ||| ||| | |||||| | |||| Sbjct 346 AACCCATAAGGCGCAAGGAAGCTGATTGG---TAGGATCCCTCACGTGTGCACTACCGAC 290 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| ||| |||||||| |||||| Sbjct 289 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCATGTCGGGACCCGGAAGATG 230 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| | Sbjct 229 GTGAACTATGCCTGAACAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 170 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||| | |||||||||||||||| Sbjct 169 CTGACGTGCAAATCGTCCGTCTGACTTGGGTATAGGGGCGA 129 Score = 102 bits (112), Expect = 3e-19 Identities = 120/165 (73%), Gaps = 12/165 (7%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||| | | | || ||| ||| |||| | || |||| Sbjct 780 TCTACGAGTCGGGTTGTTTGGGAATGTAACCCCAATCGGGCGGTGAATTCCGTCCAAAGA 721 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||| | Sbjct 720 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACTGCGAGGTAAAGATTA--------- 670 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||| ||| || | ||||||| | | ||||||||| Sbjct 669 ---AAAGAGAGTCAAAGAGTGCTTGAAATTATCGGGAGGGAAGCG 628 >seq58126 Length=442 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 265 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 324 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 325 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 384 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 385 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078611498600