Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq10266 475 1e-131 seq8705 147 7e-33 seq26918 86.0 2e-14 >seq10266 Length=7236 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1208 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1267 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 1268 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1327 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 1328 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1385 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1386 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1445 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 1446 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1505 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 1506 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 1565 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 1566 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1625 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 1626 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 1685 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 1686 CGGTGAATTCGTTCCCG 1702 >seq8705 Length=8327 Score = 147 bits (162), Expect = 7e-33 Identities = 134/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389 ||||| | |||||||||||||||| | |||||||| |||| |||||||| ||| Sbjct 137 TGGGCGATACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATTCCGCGAGGGTGAGCT 196 Query 390 AATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGG 449 || ||| ||| | || |||||||||||||| || |||||||||| || ||||||| || Sbjct 197 AACTCCAAAAACTCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGG 256 Query 450 AATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||||||| ||||| |||||| ||| | |||||||| |||||||| Sbjct 257 AATCGCTAGCAATCGCCGATCAGCCATACGGCGGTGAATTCGTTCCCG 304 >seq26918 Length=1948 Score = 86.0 bits (94), Expect = 2e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 165 GCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 224 |||||| ||||||||||||||| |||||| |||| | |||||||||||||| |||||||| Sbjct 1048 GCATGGCTGTCGTCAGCTCGTGCCGTGAGGTGTTCGATTAAGTCCCGCAACAAGCGCAAC 989 Query 225 CC 226 || Sbjct 988 CC 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503026430720