Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq10266 475 1e-131
seq8705 147 7e-33
seq26918 86.0 2e-14
>seq10266
Length=7236
Score = 475 bits (526), Expect = 1e-131
Identities = 406/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1208 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1267
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 1268 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1327
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 1328 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1385
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1386 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1445
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | || |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 1446 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1505
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 1506 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 1565
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 1566 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1625
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 1626 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 1685
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 1686 CGGTGAATTCGTTCCCG 1702
>seq8705
Length=8327
Score = 147 bits (162), Expect = 7e-33
Identities = 134/168 (80%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389
||||| | |||||||||||||||| | |||||||| |||| |||||||| |||
Sbjct 137 TGGGCGATACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATTCCGCGAGGGTGAGCT 196
Query 390 AATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGG 449
|| ||| ||| | || |||||||||||||| || |||||||||| || ||||||| ||
Sbjct 197 AACTCCAAAAACTCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGG 256
Query 450 AATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496
||||||||| ||||| |||||| ||| | |||||||| ||||||||
Sbjct 257 AATCGCTAGCAATCGCCGATCAGCCATACGGCGGTGAATTCGTTCCCG 304
>seq26918
Length=1948
Score = 86.0 bits (94), Expect = 2e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 165 GCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 224
|||||| ||||||||||||||| |||||| |||| | |||||||||||||| ||||||||
Sbjct 1048 GCATGGCTGTCGTCAGCTCGTGCCGTGAGGTGTTCGATTAAGTCCCGCAACAAGCGCAAC 989
Query 225 CC 226
||
Sbjct 988 CC 987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503026430720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |