Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq21181 307 2e-81 seq28025 105 1e-20 >seq21181 Length=3028 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 443 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 442 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 383 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 382 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 323 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 263 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 262 AAAGAGCTCTCAGTCTGTC 244 >seq28025 Length=1788 Score = 105 bits (116), Expect = 1e-20 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCT 60 Query 256 GTC 258 ||| Sbjct 61 GTC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796300333692