Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq25418 394 2e-107
seq58003 266 6e-69
seq51090 131 3e-28
>seq25418
Length=2195
Score = 394 bits (436), Expect = 2e-107
Identities = 264/293 (90%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | | || ||| |||||||||||||||||||||||||||||
Sbjct 698 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 640
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 639 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 580
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 579 ATTTTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCAACGTCCCTAT 520
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 519 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 460
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||||||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 459 CAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 407
>seq58003
Length=447
Score = 266 bits (294), Expect = 6e-69
Identities = 170/185 (92%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1 AACGCTTCGTGAATTCTGCTTCACAATGATATGAAGAGCCGACATCGAAGGATCAAAAAG 60
Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 120
Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTG 288
|||||||||| ||||||| ||| || |||||||||||||||||||| |||||| |||| |
Sbjct 121 CACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCG 180
Query 289 TATTC 293
|||||
Sbjct 181 TATTC 185
>seq51090
Length=582
Score = 131 bits (144), Expect = 3e-28
Identities = 91/102 (89%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | | || ||| |||||||||||||||||||||||||||||
Sbjct 482 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 540
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102
||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAA 582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853846929792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |