Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq25418 394 2e-107 seq58003 266 6e-69 seq51090 131 3e-28 >seq25418 Length=2195 Score = 394 bits (436), Expect = 2e-107 Identities = 264/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 698 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 640 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 639 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 580 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 579 ATTTTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCAACGTCCCTAT 520 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 519 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 460 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 459 CAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 407 >seq58003 Length=447 Score = 266 bits (294), Expect = 6e-69 Identities = 170/185 (92%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1 AACGCTTCGTGAATTCTGCTTCACAATGATATGAAGAGCCGACATCGAAGGATCAAAAAG 60 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 120 Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTG 288 |||||||||| ||||||| ||| || |||||||||||||||||||| |||||| |||| | Sbjct 121 CACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCG 180 Query 289 TATTC 293 ||||| Sbjct 181 TATTC 185 >seq51090 Length=582 Score = 131 bits (144), Expect = 3e-28 Identities = 91/102 (89%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 482 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 540 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853846929792