Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq10266 230 5e-58 seq7984 176 1e-41 seq23782 77.0 7e-12 >seq10266 Length=7236 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 763 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 706 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 705 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 646 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 645 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 586 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 585 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 539 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 538 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 482 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 481 TCTTACGCGTTACTCACCCGTCCGCCACT 453 >seq7984 Length=8945 Score = 176 bits (194), Expect = 1e-41 Identities = 155/191 (81%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 8 ATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCC 67 ||||| || |||||| | |||| | ||||| || | ||| |||||||||||| Sbjct 7079 ATCCGTAGGCCTTCTACCTT-CACGTGACATTG-CTCCGTTAGGTTTTCGCCCATTGCAG 7022 Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||| ||||||||||||||| ||||||||||| | |||||||||| |||||||| || Sbjct 7021 AAAATTTCCCACTGCTGCCTCCTGTAGGAGTCTGTGCTGTGTCTCAGTCCCAGTGTGGCT 6962 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| ||| || ||| ||| |||||||||| ||| ||| |||||||||||| Sbjct 6961 GATCATCCTCTCGGACTAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 6902 Query 188 GCTAATCCGAC 198 ||||||| ||| Sbjct 6901 GCTAATCAGAC 6891 >seq23782 Length=2495 Score = 77.0 bits (84), Expect = 7e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| | |||||| | || ||| |||||||||||| ||||| | ||||| Sbjct 981 GCTGGATCAGGCTTGCACCCATTTTAAAAGATTTCCCACTGCTGCC-CCCGTGGAAGTCT 923 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 || || ||||||| | || || ||||| ||| ||||||| || Sbjct 922 GGGGCGCATCTCAGTCACGGTATGGCTGATTTTCCATAAAGACCAGCTA 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071306072960