Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq10266 269 6e-70 seq7984 168 2e-39 seq23782 82.4 2e-13 >seq10266 Length=7236 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 765 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 706 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 705 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 646 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 645 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 586 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 585 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 537 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 536 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 479 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 478 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 436 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 435 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 392 >seq7984 Length=8945 Score = 168 bits (186), Expect = 2e-39 Identities = 147/183 (80%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 13 CCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATA 72 ||| ||||||||| | | |||| | ||| ||| | | ||| || ||||||||| || | Sbjct 7077 CCGTAGGCCTTCTACCTTCACGTGACATTGCTCCGTTAGGTTTTCGCCCATTGCAGAAAA 7018 Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132 || ||||||||||||||| ||||||||||| | |||||||||| |||||||||||| || Sbjct 7017 TTTCCCACTGCTGCCTCCTGTAGGAGTCTGTGCTGTGTCTCAGTCCCAGTGTGGCTGATC 6958 Query 133 ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192 |||||||| ||| ||||| ||| |||||| ||| || ||| || | ||||||||||| Sbjct 6957 ATCCTCTCGGACTAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTA 6898 Query 193 ATC 195 ||| Sbjct 6897 ATC 6895 >seq23782 Length=2495 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || |||| ||||||||||| |||||| | || ||| |||||||||||| ||||| | || Sbjct 984 ATTGCTGGATCAGGCTTGCACCCATTTTAAAAGATTTCCCACTGCTGCC-CCCGTGGAAG 926 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||| || ||||||| | || |||||| | ||| |||||||||| Sbjct 925 TCTGGGGCGCATCTCAGTCACGGTATGGCTGATTTTCCATAAAGACCAGCTA 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221608716032