Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq10266 269 6e-70
seq7984 168 2e-39
seq23782 82.4 2e-13
>seq10266
Length=7236
Score = 269 bits (298), Expect = 6e-70
Identities = 303/404 (75%), Gaps = 30/404 (7%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | ||
Sbjct 765 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 706
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 705 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 646
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||||||| |||| |||||| ||| || ||| || | |||||||||
Sbjct 645 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 586
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | | | | ||| || | || ||| ||| |||| || |
Sbjct 585 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 537
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| | || | ||||||||| |||||||||| ||| | ||||||| ||||| |||
Sbjct 536 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 479
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| | |||||||||||||||||||| ||| || || |||| |||
Sbjct 478 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 436
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 435 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 392
>seq7984
Length=8945
Score = 168 bits (186), Expect = 2e-39
Identities = 147/183 (80%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 13 CCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATA 72
||| ||||||||| | | |||| | ||| ||| | | ||| || ||||||||| || |
Sbjct 7077 CCGTAGGCCTTCTACCTTCACGTGACATTGCTCCGTTAGGTTTTCGCCCATTGCAGAAAA 7018
Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132
|| ||||||||||||||| ||||||||||| | |||||||||| |||||||||||| ||
Sbjct 7017 TTTCCCACTGCTGCCTCCTGTAGGAGTCTGTGCTGTGTCTCAGTCCCAGTGTGGCTGATC 6958
Query 133 ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192
|||||||| ||| ||||| ||| |||||| ||| || ||| || | |||||||||||
Sbjct 6957 ATCCTCTCGGACTAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTA 6898
Query 193 ATC 195
|||
Sbjct 6897 ATC 6895
>seq23782
Length=2495
Score = 82.4 bits (90), Expect = 2e-13
Identities = 86/112 (77%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98
|| |||| ||||||||||| |||||| | || ||| |||||||||||| ||||| | ||
Sbjct 984 ATTGCTGGATCAGGCTTGCACCCATTTTAAAAGATTTCCCACTGCTGCC-CCCGTGGAAG 926
Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150
||||| || ||||||| | || |||||| | ||| ||||||||||
Sbjct 925 TCTGGGGCGCATCTCAGTCACGGTATGGCTGATTTTCCATAAAGACCAGCTA 874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221608716032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |