Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq10266 333 8e-89
seq7984 170 6e-40
>seq10266
Length=7236
Score = 333 bits (368), Expect = 8e-89
Identities = 281/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 574 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 633
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 634 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 693
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 694 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 753
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
|||||| |||||| | || ||| | | || ||||| |||||||||| || |||
Sbjct 754 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 813
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 814 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 873
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 874 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 915
>seq7984
Length=8945
Score = 170 bits (188), Expect = 6e-40
Identities = 153/192 (80%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||||||||||| ||| || |||||||||||||| ||| |||||| |
Sbjct 6889 GCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTAGTC 6948
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| |||||| ||| |||||||||| | || |||||||| |||||||||
Sbjct 6949 CGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCACAGACTCCTACAGGAGGCAGC 7008
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||||| ||| || |||||||| ||| ||| | | ||||| | | ||||| | |||
Sbjct 7009 AGTGGGAAATTTTCTGCAATGGGCGAAAACCTAACGGAGCAATGTCACGTGAAGGTAGAA 7068
Query 341 GGCCTTCGGGTC 352
||||| ||| ||
Sbjct 7069 GGCCTACGGATC 7080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1496630573568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |