Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq21181 320 3e-85 seq62005 174 3e-41 >seq21181 Length=3028 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 335 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 390 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 391 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 450 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 451 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 509 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 510 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 568 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 569 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 628 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 629 GTCCCTGCCCTTTGTA 644 >seq62005 Length=289 Score = 174 bits (192), Expect = 3e-41 Identities = 144/173 (83%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 ||||||||||||||| | ||||||||||| ||| ||||||| ||| | | ||||| Sbjct 289 CGCGCGCTACACTGATGTATTCAACGAGTTCA-CACTTTGGCCGACAGGCCCGAATAATC 231 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 || | ||| | ||||| |||||||||| ||||| |||| || ||||||||||||||| Sbjct 230 TT-TGAAATTTCATCGTGATGGGGATAGATCATTGTAATTGTTAGTCTTCAACGAGGAAT 172 Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 171 TCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946586858496