Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq21181 320 3e-85
seq62005 174 3e-41
>seq21181
Length=3028
Score = 320 bits (354), Expect = 3e-85
Identities = 263/316 (83%), Gaps = 13/316 (4%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | ||| | || ||| ||||||
Sbjct 335 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 390
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | | | || | | ||||||||||||||||||||||||||||||
Sbjct 391 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 450
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 451 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 509
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||
Sbjct 510 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 568
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 569 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 628
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 629 GTCCCTGCCCTTTGTA 644
>seq62005
Length=289
Score = 174 bits (192), Expect = 3e-41
Identities = 144/173 (83%), Gaps = 2/173 (1%)
Strand=Plus/Minus
Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215
||||||||||||||| | ||||||||||| ||| ||||||| ||| | | |||||
Sbjct 289 CGCGCGCTACACTGATGTATTCAACGAGTTCA-CACTTTGGCCGACAGGCCCGAATAATC 231
Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275
|| | ||| | ||||| |||||||||| ||||| |||| || |||||||||||||||
Sbjct 230 TT-TGAAATTTCATCGTGATGGGGATAGATCATTGTAATTGTTAGTCTTCAACGAGGAAT 172
Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 171 TCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946586858496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |