Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq10266 132 9e-29
>seq10266
Length=7236
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 4074 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 4133
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||||
Sbjct 4134 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 4185
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 4186 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 4243
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 4244 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 4303
Query 249 CCT 251
|||
Sbjct 4304 CCT 4306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917805501312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |