Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq25418 426 5e-117 seq58073 302 1e-79 seq34938 269 9e-70 seq58003 168 2e-39 seq62306 107 6e-21 >seq25418 Length=2195 Score = 426 bits (472), Expect = 5e-117 Identities = 324/377 (86%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| ||||||| ||| | ||||||||||||||||||| Sbjct 373 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAACTCATCTTAGGACACCTGCGTTATC 314 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 313 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 254 Query 127 GGCCCGC-GAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 | || || |||| | |||| | | || | || | || | || | |||||||||| Sbjct 253 GACCTGCCGAAGCAAGCCTTGGATCTAAAAGAAGGG-GTTGTTGCCCCGCTTCCGCTTCA 195 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| |||||||||||||||||| |||| | ||||||| Sbjct 194 CGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGTGCCGGA---GCTCCCA 138 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 78 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 77 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 18 Query 363 GATAGGGACAGTGGGAA 379 || |||||||||||||| Sbjct 17 GACAGGGACAGTGGGAA 1 >seq58073 Length=444 Score = 302 bits (334), Expect = 1e-79 Identities = 175/180 (97%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCAC 60 Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||| Sbjct 61 TGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAAGGACAGTG 120 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 180 >seq34938 Length=1109 Score = 269 bits (298), Expect = 9e-70 Identities = 164/173 (95%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 221 ACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 ACTTGTGCCGGA---GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 114 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 113 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTG 54 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 | |||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 53 GTTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCAT 1 >seq58003 Length=447 Score = 168 bits (186), Expect = 2e-39 Identities = 93/93 (100%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 414 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||||||||||||||||||||||||||||||| Sbjct 415 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 447 Score = 158 bits (174), Expect = 4e-36 Identities = 115/132 (87%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 219 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 278 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 279 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 338 Query 127 GGCCCG-CGAAG 137 | || | ||||| Sbjct 339 GACCTGCCGAAG 350 >seq62306 Length=278 Score = 107 bits (118), Expect = 6e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 278 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAG 219 Query 532 CATC 535 |||| Sbjct 218 CATC 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634141502336