Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq10266 127 4e-27 seq7984 87.8 4e-15 >seq10266 Length=7236 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 842 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 794 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 793 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 741 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 740 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 681 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 680 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 621 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 620 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 582 >seq7984 Length=8945 Score = 87.8 bits (96), Expect = 4e-15 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 95 ATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCA 154 |||||||| ||||| |||||||| || | ||| | || | ||| |||||| | Sbjct 7079 ATCCGTAGG-CCTTCTACCTTCACGTGACATTGCTCCGTTAGGTTTTCGCCCATTGCAGA 7021 Query 155 ATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGG 214 | ||| | ||||||||||||| |||||||| || | |||||||||| ||| ||||| | Sbjct 7020 AAATTTCCCACTGCTGCCTCCTGTAGGAGTCTGTGCTGTGTCTCAGTCCCAGTGTGGCTG 6961 Query 215 ACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTAC 274 | | ||||||| || ||| ||| | | || ||| || || || | || |||| Sbjct 6960 ATCATCCTCTCGGACTAGCTACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAG 6901 Query 275 CTAATGGAACGCA 287 ||||| ||||| Sbjct 6900 CTAATCAGACGCA 6888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068108144384