Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq52883 471 1e-130 seq1466 369 1e-99 seq62262 277 5e-72 seq21820 239 1e-60 seq62857 228 2e-57 seq54780 215 2e-53 seq64514 111 5e-22 >seq52883 Length=552 Score = 471 bits (522), Expect = 1e-130 Identities = 344/393 (88%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 396 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 338 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 278 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 277 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 218 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 217 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 158 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 157 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 100 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 99 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 40 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTA 385 |||||||||||||| |||||||||| |||||| Sbjct 39 AGCTCTAGAATTACTACGGTTATCCGAGTAGTA 7 >seq1466 Length=23105 Score = 369 bits (408), Expect = 1e-99 Identities = 396/513 (77%), Gaps = 17/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| |||| ||||||| ||| | || || ||| ||| ||||||||||||||| | Sbjct 5294 GTATTCATCTCAATTACTAGATTCGAA-GAACCCGATATTGTTATTTATTGTCACTATTT 5236 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | |||||| | || |||||||||||| | || ||| |||||||||||| ||||| Sbjct 5235 TCTCGTGTCAAAAAAGGATAATTTGCGCGCATACTATTTTCTTTGGATGTGGTAACCGTT 5176 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||| ||| ||||||||| |||||| ||||| | || ||||||| ||||||||| Sbjct 5175 TCTCAGACTC--TCTCCGGAAACGAACCATAATTATCAGTCACCCGTTACCACCATGGTA 5118 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | |||||||| ||| ||| |||||||||| | ||||||||||||||| | ||| | || Sbjct 5117 GACCACTATCTTACTATCAAAAGTTGATATGACAGAAATTTGAATGATGCGTCGTCAGCA 5058 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGG---- 293 | |||||||| |||| ||| | |||| |||||||| || | | ||| || | Sbjct 5057 CAAAGGCCATTCGATCCGTCGAATTATCATGAATCATCA--CAACAACGAGTAGAGCCCA 5000 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| |||||||||||||||| | || |||| ||||| | |||| | || ||||| Sbjct 4999 CGTCAAATTTTTATCTAATAAATGTATCCATTCCAAAAGTCAGCGTTTGTTTCACGTATT 4940 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 | ||||| |||||| |||||||||| | |||| ||| |||||| |||| |||||||| Sbjct 4939 AACTCTAAAATTACTACGGTTATCCGAG-AGTA--TTACCATCAAACAAACTATAACTGA 4883 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCT 471 ||||||||| |||||||||||| || || || | ||| | ||| ||| | |||||||||| Sbjct 4882 TTTAATGAGTCATTCGCAGTTTTACAGTCTAAATTTGTTCATAGTTATAAATGCATGGCT 4823 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| ||||| ||| Sbjct 4822 TAATCTTTGAGACAAGCATATGAATACTGTCAG 4790 >seq62262 Length=280 Score = 277 bits (306), Expect = 5e-72 Identities = 227/270 (84%), Gaps = 11/270 (4%) Strand=Plus/Minus Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA----AGG--GCGT 296 |||||||||||| ||| |||||| |||||||| || |||| || || |||| Sbjct 280 AGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCTGCGT 223 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 | ||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||| Sbjct 222 CGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGC 163 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||| Sbjct 162 TCTAGAATTACTACGGTTATCCGAGTAGTA-GTTACCATCAAACAAACTATAACTGATTT 104 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAA 474 |||||||||||||||||||||| || | ||| || ||||||| ||||||||||||||| Sbjct 103 AATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAA 44 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 43 TCTTTGAGACAAGCATATGACTACTGGCAG 14 >seq21820 Length=2889 Score = 239 bits (264), Expect = 1e-60 Identities = 227/281 (81%), Gaps = 13/281 (5%) Strand=Plus/Plus Query 230 CATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG 288 ||||||| || | ||||||||||||| ||| |||||| |||||||| | |||| || Sbjct 338 CATCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATTA--GAGCAACG 395 Query 289 A----AGGGCG--TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTT 341 || || | | ||||||||||||||| || | ||||| ||||| ||||||| Sbjct 396 GGCAGAGTCCGCATCGACCTTTTATCTAATAAATGCATCTCTTCCAAAAGTC-GGGTTTT 454 Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 | ||||||||||||| ||||||||| |||||||||| ||||| || ||| |||||| || Sbjct 455 TTGCATGTATTAGCTGTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAA 513 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGA 460 || ||||||||||||||||| |||||||||||||| || | ||| || ||||||| | Sbjct 514 ACTATAACTGATTTAATGAGTTATTCGCAGTTTCACAGTCTGAATTCATTCATACTTATA 573 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 ||||||||||||||| ||||||||||||||| ||||||||| Sbjct 574 CATGCATGGCTTAATATTTGAGACAAGCATAAGACTACTGG 614 >seq62857 Length=259 Score = 228 bits (252), Expect = 2e-57 Identities = 211/260 (81%), Gaps = 17/260 (7%) Strand=Plus/Minus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 251 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCG 192 Query 232 TCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCG 288 ||||| || | ||||||||||||| ||| |||||| |||||||| || |||| | | Sbjct 191 TCGCCAGCACAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGG 134 Query 289 AAGGG----CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA 343 || | ||| | ||||||| || ||| ||||||| ||||| | ||||| | Sbjct 133 CAGAGCCCACGTCGACCTTTTATC--ATGAAT----CCCTTCCAGAAGTTGCGGTTTGTT 80 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||| ||||||||||||||||||| |||||||||| ||||| || ||| |||||| |||| Sbjct 79 GCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAAC 21 Query 404 GATAACTGATTTAATGAGCC 423 ||||||||||| ||||||| Sbjct 20 TATAACTGATTTCATGAGCC 1 >seq54780 Length=524 Score = 215 bits (238), Expect = 2e-53 Identities = 145/158 (92%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCA-GGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 524 CCTTCCTTGGATGTGGTAGCCGTTTCTCACGGCTCCCTCTCCGGAATCGAACCCTAATTC 465 Query 156 CCCGTTACCC-GTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214 |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 TCCGTCACCCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 405 Query 215 GAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGC 251 ||||||||||||| | ||||| || | |||||||||| Sbjct 404 GAAATTTGAATGATGCGTCGCCAGCACAAAGGCCATGC 367 >seq64514 Length=205 Score = 111 bits (122), Expect = 5e-22 Identities = 112/142 (79%), Gaps = 9/142 (6%) Strand=Plus/Minus Query 251 CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA----AGG--GCGTTGGTTTTT 304 |||| ||| |||||| |||||||| || |||| || || |||| | ||| Sbjct 205 CGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCGCGTCGACCTTT 148 Query 305 TATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAAT 363 |||||||||||| || ||||||| ||||||||||||| | ||| |||||||||||||||| Sbjct 147 TATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAAT 88 Query 364 TACCACGGTTATCCATGTAGTA 385 ||| |||||||||| |||||| Sbjct 87 TACTACGGTTATCCGAGTAGTA 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509422287872