Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 172 4e-38
seq549 168 5e-37
>seq12321
Length=6064
Score = 172 bits (190), Expect = 4e-38
Identities = 553/843 (66%), Gaps = 20/843 (2%)
Strand=Plus/Plus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| ||||| ||||| ||||||||||| | ||||| ||||| | ||| |||
Sbjct 846 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCGGCGAC 905
Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214
| ||||||||| | | | ||| ||| || | || ||||| ||||| || ||||
Sbjct 906 ACACGCGACTGGGAGAATCTCAACGA-CGGCGAGCGCCACTTCATCAAACACGTCCTGGC 964
Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274
||||| ||||| || ||||| |||||| |||||| | || ||| | ||
Sbjct 965 CTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGA 1024
Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334
|| || || || ||||||||| ||||||||||||||||| || || ||||| ||||
Sbjct 1025 CGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATCCA 1084
Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394
||| |||||||| ||| | || |||| || ||||||| || ||| | || |
Sbjct 1085 CTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGACAACAAGGAGAGGGACCA 1144
Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTC 61452
| ||| ||||||||||| || || | | | ||| ||| || | |||||| |
Sbjct 1145 CCTCTTCCGGGCCATCGAGACCATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCCATG 1202
Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGT 61511
|| |||||| | | | | || || | || | ||| | | || || || ||
Sbjct 1203 AAGTGGATCGACGG---ATCTCAGACTTTCGCGGAGAGGATCG-TCGCCTTCGCCTGCGT 1258
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
||| || | || ||| ||| || | | ||||| ||| | ||||| ||||| ||
Sbjct 1259 CGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCT 1318
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||| |||||||||||| ||| ||| | || || | |||||||| | || || ||
Sbjct 1319 CATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCACTGCGA 1378
Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA--ATCGTCCGTCGGAGGAGCGTGTG 61689
||| || || || | || ||| || || | ||| |||||||||| |||
Sbjct 1379 TTTCGCCTGCCTG--ATCTATACCTTAT-TGAGGACGAAGCTCC--CGGAGGAGCGCGTG 1433
Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749
||| || | || ||||| ||||| ||| ||| || ||||| | ||
Sbjct 1434 AAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCG 1493
Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809
| | | | || |||||| ||| || ||| |||||||| || ||||| || ||
Sbjct 1494 TGCGCGTTGGTGGGGATGAATCGTGATCTGATGAGTCAGTATATCGAGTTTGTGGCGGAT 1553
Query 61810 CGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868
| || |||| || ||||||| | | | | || | | || || |||||||
Sbjct 1554 AGGCTTTTGGGCGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGATTG 1612
Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
||||| |||| ||||| | || ||||| || || || ||||| | || || || ||
Sbjct 1613 GATGGAGTTGATCTCGCTTCAGGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGTGATTA 1672
Query 61929 TCA 61931
||
Sbjct 1673 CCA 1675
>seq549
Length=32968
Score = 168 bits (186), Expect = 5e-37
Identities = 390/580 (67%), Gaps = 12/580 (2%)
Strand=Plus/Plus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||| | || | | || ||| |||||||| || || ||||| |||||||
Sbjct 19763 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 19822
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179
|||| | ||||| ||||| | ||| |||||| |||||||||| | | ||
Sbjct 19823 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACG 19882
Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239
| ||| || | ||| ||| | ||||| || | || ||||| ||||| || ||||| |||
Sbjct 19883 A-CGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATC 19941
Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299
||| |||||| | |||||| | || || || || || ||||| ||
Sbjct 19942 GTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCC 20001
Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359
||||||||||||||||| || || ||||| ||||||| |||||||||||| | ||| |
Sbjct 20002 TTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTA 20061
Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419
|| || ||||||| || ||| | || | | ||| || |||||||||||
Sbjct 20062 GACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATC 20121
Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479
|| || ||| || || | |||||||| || |||||| | | || |
Sbjct 20122 CCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGG---CC 20178
Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGT 61537
|| | || | ||| | |||| || || || || || | || ||| | | | | |
Sbjct 20179 TTCGCCGAGAGGATCG-TGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTT 20237
Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597
|| | | ||||| ||| ||||||| ||||| || ||||| ||||| |||||| ||| |
Sbjct 20238 CTG-CTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACG 20296
Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637
|| |||| || | ||||| ||| | || || || || ||
Sbjct 20297 AGCTGATCTCGAGAGACGAAGGCCTCCACTGCGACTTCGC 20336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397254350156480
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