Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12321 172 4e-38 seq549 168 5e-37 >seq12321 Length=6064 Score = 172 bits (190), Expect = 4e-38 Identities = 553/843 (66%), Gaps = 20/843 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| ||||| ||||||||||| | ||||| ||||| | ||| ||| Sbjct 846 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCGGCGAC 905 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||||| | | | ||| ||| || | || ||||| ||||| || |||| Sbjct 906 ACACGCGACTGGGAGAATCTCAACGA-CGGCGAGCGCCACTTCATCAAACACGTCCTGGC 964 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| |||||| | || ||| | || Sbjct 965 CTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGA 1024 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || || ||||||||| ||||||||||||||||| || || ||||| |||| Sbjct 1025 CGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATCCA 1084 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| |||||||| ||| | || |||| || ||||||| || ||| | || | Sbjct 1085 CTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGACAACAAGGAGAGGGACCA 1144 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTC 61452 | ||| ||||||||||| || || | | | ||| ||| || | |||||| | Sbjct 1145 CCTCTTCCGGGCCATCGAGACCATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCCATG 1202 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGT 61511 || |||||| | | | | || || | || | ||| | | || || || || Sbjct 1203 AAGTGGATCGACGG---ATCTCAGACTTTCGCGGAGAGGATCG-TCGCCTTCGCCTGCGT 1258 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||| || | || ||| ||| || | | ||||| ||| | ||||| ||||| || Sbjct 1259 CGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCT 1318 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| |||||||||||| ||| ||| | || || | |||||||| | || || || Sbjct 1319 CATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCACTGCGA 1378 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA--ATCGTCCGTCGGAGGAGCGTGTG 61689 ||| || || || | || ||| || || | ||| |||||||||| ||| Sbjct 1379 TTTCGCCTGCCTG--ATCTATACCTTAT-TGAGGACGAAGCTCC--CGGAGGAGCGCGTG 1433 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 ||| || | || ||||| ||||| ||| ||| || ||||| | || Sbjct 1434 AAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCG 1493 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | | | || |||||| ||| || ||| |||||||| || ||||| || || Sbjct 1494 TGCGCGTTGGTGGGGATGAATCGTGATCTGATGAGTCAGTATATCGAGTTTGTGGCGGAT 1553 Query 61810 CGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 | || |||| || ||||||| | | | | || | | || || ||||||| Sbjct 1554 AGGCTTTTGGGCGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGATTG 1612 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||| ||||| | || ||||| || || || ||||| | || || || || Sbjct 1613 GATGGAGTTGATCTCGCTTCAGGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGTGATTA 1672 Query 61929 TCA 61931 || Sbjct 1673 CCA 1675 >seq549 Length=32968 Score = 168 bits (186), Expect = 5e-37 Identities = 390/580 (67%), Gaps = 12/580 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 19763 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 19822 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | ||||| ||||| | ||| |||||| |||||||||| | | || Sbjct 19823 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACG 19882 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | ||| || | ||| ||| | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 19883 A-CGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATC 19941 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| |||||| | |||||| | || || || || || ||||| || Sbjct 19942 GTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCC 20001 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| || || ||||| ||||||| |||||||||||| | ||| | Sbjct 20002 TTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTA 20061 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || ||||||| || ||| | || | | ||| || ||||||||||| Sbjct 20062 GACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATC 20121 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || || ||| || || | |||||||| || |||||| | | || | Sbjct 20122 CCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGG---CC 20178 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGT 61537 || | || | ||| | |||| || || || || || | || ||| | | | | | Sbjct 20179 TTCGCCGAGAGGATCG-TGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTT 20237 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || | | ||||| ||| ||||||| ||||| || ||||| ||||| |||||| ||| | Sbjct 20238 CTG-CTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACG 20296 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || |||| || | ||||| ||| | || || || || || Sbjct 20297 AGCTGATCTCGAGAGACGAAGGCCTCCACTGCGACTTCGC 20336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397254350156480