Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 556 1e-153
seq43812 437 1e-117
seq18917 232 7e-56
seq12239 183 3e-41
seq4821 136 4e-27
seq10427 127 2e-24
seq10249 122 1e-22
seq49459 82.4 8e-11
>seq6139
Length=10899
Score = 556 bits (616), Expect = 1e-153
Identities = 723/993 (73%), Gaps = 5/993 (1%)
Strand=Plus/Plus
Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604
|| || ||||||||||| || |||||||| || | || ||||| ||| ||| | |||
Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165
Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664
| || |||||| | || || || || || | || |||||||| |||||| | |||
Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 5225
Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724
||||||||| | || ||| |||||| | || || |||||| ||||| ||| | |
Sbjct 5226 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 5285
Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783
| | |||||| || || || || ||||||||||| || ||||| ||||| | ||
Sbjct 5286 TTAGCGCATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 5344
Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843
| ||| | || || || ||| |||||| || |||||||| |||||||| | || ||
Sbjct 5345 GTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGG 5404
Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902
|| ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| |
Sbjct 5405 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 5463
Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962
| || ||||||||||| |||||||||||||| |||||||| || ||||| || || |
Sbjct 5464 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTC 5523
Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022
| ||| |||||||| ||||| ||||| || || ||||| || | ||| | || |
Sbjct 5524 AATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCT 5583
Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082
| | ||||| || || |||||||| | || || || || |||||||| ||||| |||
Sbjct 5584 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTG 5643
Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142
| |||| | ||| || | | |||||||| |||| ||||| ||||| || | |
Sbjct 5644 TACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 5703
Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202
|||||||||| |||||||| ||| |||||| || | || |||| || || ||||
Sbjct 5704 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 5763
Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262
| || ||||| || || ||||| || |||||||| ||||| || |||||||| ||||
Sbjct 5764 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 5823
Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322
| |||||||| |||||||||||| | || || || || | ||| | |||| ||| ||
Sbjct 5824 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 5883
Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382
| || | | || || ||| | || || ||||| || ||||| || || ||||| || |
Sbjct 5884 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 5943
Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442
|||||||||| ||||| |||||||| || ||||| || || ||||| || || || ||||
Sbjct 5944 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 6003
Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502
|| |||| || ||| |||| | ||||| || ||||| ||| || ||||||||||||
Sbjct 6004 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 6063
Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535
| ||||| || | || ||||| || | |||||
Sbjct 6064 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 6095
>seq43812
Length=736
Score = 437 bits (484), Expect = 1e-117
Identities = 443/577 (77%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160280
|||| ||| | ||||||| | ||||| || ||| || |||| ||||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 160281 TCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160340
||||||||||||| |||| |||| |||||||||| || || ||||| || |||||||| |
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 160341 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATG 160400
| || |||||| | ||||| ||||| |||||||| || || || || |||||||||||
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 160401 GATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATG 160460
| ||| |||| ||||||||| | |||| || || ||||||| ||| || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 160461 GTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCG 160520
| |||| ||||||||||| ||||| ||||||||||| || || || || || || || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 160521 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCG 160580
| || ||||||||||||||||| || ||||| || || ||| | || |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 160581 CTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCA 160640
| |||||||| || || || || ||||| ||||| | ||| || ||| ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 160641 ATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACA 160700
| || ||||||||||| |||||||| || | | || | ||||||| ||| | || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 160701 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACG 160760
||||||| || | ||||||| ||| || || |||||||| ||||| || ||||| |
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 160761 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTC 160797
|||||||||||||||| ||||| ||||||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 232 bits (256), Expect = 7e-56
Identities = 302/418 (72%), Gaps = 0/418 (0%)
Strand=Plus/Plus
Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862
||||| | ||| ||||| |||| | ||||| || || | || ||||| || || ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922
||||| || || | ||| | |||||| | || || |||| ||||| ||||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982
|| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042
|| || || ||||| || |||| |||| || |||||| | || || ||||| ||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC 160102
|||||||| ||||| | || || ||||| || ||||||||||||| |||| | ||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 160103 TTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGT 160162
| ||||| | | || | | ||||||||||||||||||||||| || ||||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 160163 CTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220
|| ||||||||||| ||||| ||||||||| || ||||| || || |||||| |||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 3610
>seq12239
Length=6102
Score = 183 bits (202), Expect = 3e-41
Identities = 365/530 (69%), Gaps = 8/530 (2%)
Strand=Plus/Minus
Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604
|| || ||||||||||| || |||||||| || | || ||||| ||| ||| | |||
Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534
Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664
| || |||||| | || || || || || | || ||||||| |||||| | |||
Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGCT 474
Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724
|||| |||| | || ||| | | || | || | |||||| ||||| ||| | |
Sbjct 473 AGTTTCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 414
Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 161782
| | |||||| || || || || | ||||| ||| || ||||| || ||| ||| | |
Sbjct 413 TTAGCGCATTCT-TTGTTATTACTGT-GGGTCATGAAGCACAAGGAGATTTTAGTC-GTT 357
Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842
|| ||| | || || ||| |||||| | |||||| | |||||||| | || |
Sbjct 356 GGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATAG 297
Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901
| || ||| | ||||| |||||||||||||| ||| || | | | ||||| |||||
Sbjct 296 GTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGTGACCTTATAATGCA 238
Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961
|| || ||||||||||| ||||||| |||| | | |||||| || ||||||| ||
Sbjct 237 ATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTCTAATTTATCCTC-AGGT 179
Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021
|| || |||||||| || || ||||| || || | ||| || ||||| | ||
Sbjct 178 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCCTC 119
Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGG 162071
|| | |||| || | |||||||| | || | | || ||||||||
Sbjct 118 TTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGG 69
>seq4821
Length=12785
Score = 136 bits (150), Expect = 4e-27
Identities = 147/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| ||||| ||||||||||| |||||||| ||||| || ||||| || |||||||||
Sbjct 11182 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGT 11123
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
||||||| | ||||| ||||| ||| | ||| |||| || || ||||| || |
Sbjct 11122 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 11063
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||||| |||||||| || ||| |||||| || || || || | |||||||| |||
Sbjct 11062 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 11003
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 11002 TCTGATGTTACCATT 10988
>seq10427
Length=7142
Score = 127 bits (140), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| ||||| ||||||||||| |||||||| | ||| || ||||| || |||||||||
Sbjct 1518 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 1459
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
||||||| | ||||| ||||| ||| | ||| | || || || ||||| || |
Sbjct 1458 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGT 1399
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||||| |||||||| || ||| |||||| || || || || | |||||||| |||
Sbjct 1398 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 1339
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 1338 TCTGATGTTACCATT 1324
>seq10249
Length=7246
Score = 122 bits (134), Expect = 1e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| ||||| |||||||| || |||||||| | ||| || ||||| || ||||| |||
Sbjct 5638 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 5697
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
||||||| | || || ||||| ||| | |||||| || || || ||||| || |
Sbjct 5698 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTTGACCAGTCTGACCAGAGT 5757
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||||| |||||||| || ||| |||||| || || || || | |||||||| |||
Sbjct 5758 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 5817
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 5818 TCTGATGTTACCATT 5832
>seq49459
Length=611
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 160255 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCA 160314
||| || |||| ||||||||| || |||||||||||||| |||| |||| ||||||||||
Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547
Query 160315 AGCAGAACACAATAT 160329
|| || ||||| ||
Sbjct 548 GGCTGAGCACAACAT 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 550929854109600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |