Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031922.1
Length=174830
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 524 8e-144
seq43812 434 1e-116
seq18917 253 2e-62
seq12239 154 2e-32
seq293 100 3e-16
seq49459 91.5 2e-13
seq3574 82.4 9e-11
>seq6139
Length=10899
Score = 524 bits (580), Expect = 8e-144
Identities = 711/990 (72%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976
|| ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | ||
Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165
Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036
| || || ||| | || |||||||| ||||| || ||||| || || || | ||
Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 5224
Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093
||||| | | || ||| ||||| | || || || || || || |||||| ||
Sbjct 5225 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 5282
Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153
| | | |||||| | | |||| ||||||||||| | || || || || | | |
Sbjct 5283 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 5342
Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213
||||| ||| | || || || ||||||||||| || ||||||| ||||||| | ||
Sbjct 5343 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATA 5402
Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273
||||| ||| | || || |||||| |||| || ||| | || || || |||||
Sbjct 5403 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 5462
Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333
|| || ||||||||||| |||||||| ||||| || || || || || || || ||
Sbjct 5463 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 5522
Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393
||||| ||||||||||||| || ||||| || ||||| || || ||||| || |
Sbjct 5523 CAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTC 5582
Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453
|| ||||||| || ||||| |||||| | ||||| || ||||||||||| || || ||
Sbjct 5583 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGT 5642
Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513
| || || | ||||| | || ||||||||||||||||| ||||| |||||||| |||
Sbjct 5643 GTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 5702
Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573
||||||||||| ||||||| ||| || || | || ||||||| ||||| |||
Sbjct 5703 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 5762
Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633
|| || |||||||| || |||||||| ||||| || || ||||| ||||||| ||||
Sbjct 5763 TATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAAT 5822
Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693
|| |||||||| || ||||||||| | ||||| || || | || | |||| ||| ||
Sbjct 5823 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 5882
Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753
|||| | ||||||| || | || || ||||| ||||| || || || ||||| ||
Sbjct 5883 CTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 5942
Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813
| ||||| || ||||| ||||||||||| |||||||| || || || || | || |||
Sbjct 5943 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAA 6002
Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873
|| | || || |||||||| | ||| ||||| || ||| || |||| || |||
Sbjct 6003 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6062
Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903
|| ||||| || | || ||||| || |||
Sbjct 6063 GAGGTTCTACCACGTGGAAACGCTCTTTAA 6092
>seq43812
Length=736
Score = 434 bits (480), Expect = 1e-116
Identities = 435/565 (77%), Gaps = 0/565 (0%)
Strand=Plus/Plus
Query 161002 TCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCT 161061
|||| || | |||||||| ||| |||||||||||||| || || ||||||||||| |
Sbjct 13 TCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT 72
Query 161062 TCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGT 161121
||||||| ||| |||| |||||||| || |||||||| || |||||||| || |||||||
Sbjct 73 TCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGT 132
Query 161122 TGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTA 161181
| ||||| |||||||| ||||| || || || || || ||||||||||| |||| |
Sbjct 133 TAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAA 192
Query 161182 CTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTG 161241
||||| || | | |||||||| || || || || || | || |||| || |
Sbjct 193 CTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCG 252
Query 161242 GTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCT 161301
||||||||||||| || |||||||| || |||||||| ||||| || || || ||||||
Sbjct 253 GTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 312
Query 161302 TCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361
||||||| ||| |||||||| || ||||| || || |||||| | || || ||||| |
Sbjct 313 TCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGG 372
Query 161362 TTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGAT 161421
| || ||||| ||||| ||||| | ||| | || ||||| |||||||| || || |
Sbjct 373 TAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTT 432
Query 161422 TCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACG 161481
|||| |||||||| || | | ||| |||| || || | || || ||||||||
Sbjct 433 TCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATA 492
Query 161482 TTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 161541
|| | || ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 493 TTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCC 552
Query 161542 CTCTGGATCTCGCTGCTGCTGAGTC 161566
|||| || || ||||||| ||||||
Sbjct 553 CTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 253 bits (280), Expect = 2e-62
Identities = 306/414 (74%), Gaps = 2/414 (0%)
Strand=Plus/Plus
Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631
||||| | ||| ||||| ||| | || ||||||||| | || ||||| ||||| ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691
||||| || || | ||| | ||||| | ||||||| || ||| ||||||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751
|| || || || || ||||| |||||||| ||| |||| || || | || ||||||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811
|| || || ||||| || ||||| |||| || |||||| | || || || || ||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871
|||||||||||||| ||||||||||||| ||||| ||||||||||| |||| | ||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931
| ||||| | | || | || || |||||||| |||||||||||| | |||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 160932 CTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGC 160984
|| || ||||| || ||||| ||| ||||||||||| || |||||||| |||||
Sbjct 3553 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 154 bits (170), Expect = 2e-32
Identities = 357/532 (67%), Gaps = 12/532 (2%)
Strand=Plus/Minus
Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976
|| ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | ||
Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534
Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036
| || || ||| | || |||||||| ||||| || ||||| | || || | ||
Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGC- 475
Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093
||||| | | || ||| | | | | || | || || || || |||||| ||
Sbjct 474 --TAGTTTCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAAT 417
Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153
| | | |||||| | | |||| |||| || ||| | || || || || | | |
Sbjct 416 AGTTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACAAGGAGATTTTAGTCGT 358
Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213
||||| ||| | || || |||| |||||| | ||||| | ||||||| | ||
Sbjct 357 TGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATA 298
Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273
||||| ||| | || || |||||| |||| || ||| | | || || |||||
Sbjct 297 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTGACCTTATAATGCA 238
Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGT--CAGCGTTTTCCTTATGTACCCTCTCG 164331
|| || ||||||||||| ||||||| ||| | | || ||| || || || |||| |
Sbjct 237 ATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTT--CTAATTTATCCTCA-G 181
Query 164332 GGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCT 164391
| |||||| ||||||||||||| || ||||| || |||| || || | ||| ||
Sbjct 180 GTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCC 121
Query 164392 TGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGG 164443
| || |||||| || |||| |||||| | |||| | |||||||||||
Sbjct 120 TCTTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGG 69
>seq293
Length=39549
Score = 100 bits (110), Expect = 3e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724
||||||| || ||| |||||||||| || || || | ||||| ||||||| ||
Sbjct 26001 TTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATT 26060
Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784
|| | | || | ||||||||| | || || || ||||| || ||| | |||| |
Sbjct 26061 TCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACA 26120
Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844
|| |||||| | || || || | || ||||||||||||| | ||| ||||||||| |||
Sbjct 26121 GCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATAC 26180
Query 160845 AAT 160847
|||
Sbjct 26181 AAT 26183
>seq49459
Length=611
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083
||| |||||||||||||| || || ||||||||||| |||||||| ||| |||| |||||
Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547
Query 161084 GGCAGAACACAACAT 161098
||| || ||||||||
Sbjct 548 GGCTGAGCACAACAT 562
>seq3574
Length=15223
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155
|| ||||||||||| |||||| || || ||| | ||| ||||| | || || ||
Sbjct 1187 ATATTGGATGCTGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCC 1128
Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215
|||||| | || || ||||| ||| | ||| ||||||||| ||| || |||
Sbjct 1127 TGTTCCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGTCTGATGGTTCGTTT 1068
Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCT 50263
||||| ||| |||| |||| |||| ||||||||| ||||| |||
Sbjct 1067 CTTGAGGATCATCACTTTGAGAAAGGTTATGTCTTGACTTGTGTGGCT 1020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558875419748800
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