Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq6139 524 8e-144 seq43812 434 1e-116 seq18917 253 2e-62 seq12239 154 2e-32 seq293 100 3e-16 seq49459 91.5 2e-13 seq3574 82.4 9e-11 >seq6139 Length=10899 Score = 524 bits (580), Expect = 8e-144 Identities = 711/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 5224 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| || Sbjct 5225 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 5282 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 5283 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 5342 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||||||||||| || ||||||| ||||||| | || Sbjct 5343 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATA 5402 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 5403 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 5462 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || || ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 5463 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 5522 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 ||||| ||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 5523 CAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTC 5582 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 5583 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGT 5642 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | || || | ||||| | || ||||||||||||||||| ||||| |||||||| ||| Sbjct 5643 GTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 5702 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 5703 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 5762 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 || || |||||||| || |||||||| ||||| || || ||||| ||||||| |||| Sbjct 5763 TATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAAT 5822 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || |||||||| || ||||||||| | ||||| || || | || | |||| ||| || Sbjct 5823 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 5882 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 |||| | ||||||| || | || || ||||| ||||| || || || ||||| || Sbjct 5883 CTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 5942 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||| ||||||||||| |||||||| || || || || | || ||| Sbjct 5943 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAA 6002 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | || || |||||||| | ||| ||||| || ||| || |||| || ||| Sbjct 6003 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6062 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 6063 GAGGTTCTACCACGTGGAAACGCTCTTTAA 6092 >seq43812 Length=736 Score = 434 bits (480), Expect = 1e-116 Identities = 435/565 (77%), Gaps = 0/565 (0%) Strand=Plus/Plus Query 161002 TCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCT 161061 |||| || | |||||||| ||| |||||||||||||| || || ||||||||||| | Sbjct 13 TCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT 72 Query 161062 TCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGT 161121 ||||||| ||| |||| |||||||| || |||||||| || |||||||| || ||||||| Sbjct 73 TCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGT 132 Query 161122 TGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTA 161181 | ||||| |||||||| ||||| || || || || || ||||||||||| |||| | Sbjct 133 TAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAA 192 Query 161182 CTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTG 161241 ||||| || | | |||||||| || || || || || | || |||| || | Sbjct 193 CTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCG 252 Query 161242 GTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCT 161301 ||||||||||||| || |||||||| || |||||||| ||||| || || || |||||| Sbjct 253 GTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 312 Query 161302 TCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361 ||||||| ||| |||||||| || ||||| || || |||||| | || || ||||| | Sbjct 313 TCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGG 372 Query 161362 TTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGAT 161421 | || ||||| ||||| ||||| | ||| | || ||||| |||||||| || || | Sbjct 373 TAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTT 432 Query 161422 TCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACG 161481 |||| |||||||| || | | ||| |||| || || | || || |||||||| Sbjct 433 TCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATA 492 Query 161482 TTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 161541 || | || ||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 493 TTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCC 552 Query 161542 CTCTGGATCTCGCTGCTGCTGAGTC 161566 |||| || || ||||||| |||||| Sbjct 553 CTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 253 bits (280), Expect = 2e-62 Identities = 306/414 (74%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| ||| | || ||||||||| | || ||||| ||||| || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 ||||| || || | ||| | ||||| | ||||||| || ||| |||||||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| |||||||| ||| |||| || || | || |||||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || || || ||||| || ||||| |||| || |||||| | || || || || || Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 |||||||||||||| ||||||||||||| ||||| ||||||||||| |||| | || Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931 | ||||| | | || | || || |||||||| |||||||||||| | ||| Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 160932 CTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGC 160984 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| Sbjct 3553 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 154 bits (170), Expect = 2e-32 Identities = 357/532 (67%), Gaps = 12/532 (2%) Strand=Plus/Minus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| | || || | || Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGC- 475 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| | | | | || | || || || || |||||| || Sbjct 474 --TAGTTTCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAAT 417 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| |||| || ||| | || || || || | | | Sbjct 416 AGTTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACAAGGAGATTTTAGTCGT 358 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || |||| |||||| | ||||| | ||||||| | || Sbjct 357 TGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATA 298 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || |||||| |||| || ||| | | || || ||||| Sbjct 297 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTGACCTTATAATGCA 238 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGT--CAGCGTTTTCCTTATGTACCCTCTCG 164331 || || ||||||||||| ||||||| ||| | | || ||| || || || |||| | Sbjct 237 ATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTT--CTAATTTATCCTCA-G 181 Query 164332 GGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCT 164391 | |||||| ||||||||||||| || ||||| || |||| || || | ||| || Sbjct 180 GTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCC 121 Query 164392 TGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGG 164443 | || |||||| || |||| |||||| | |||| | ||||||||||| Sbjct 120 TCTTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGG 69 >seq293 Length=39549 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| || ||| |||||||||| || || || | ||||| ||||||| || Sbjct 26001 TTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATT 26060 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 || | | || | ||||||||| | || || || ||||| || ||| | |||| | Sbjct 26061 TCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACA 26120 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || |||||| | || || || | || ||||||||||||| | ||| ||||||||| ||| Sbjct 26121 GCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATAC 26180 Query 160845 AAT 160847 ||| Sbjct 26181 AAT 26183 >seq49459 Length=611 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083 ||| |||||||||||||| || || ||||||||||| |||||||| ||| |||| ||||| Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547 Query 161084 GGCAGAACACAACAT 161098 ||| || |||||||| Sbjct 548 GGCTGAGCACAACAT 562 >seq3574 Length=15223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 || ||||||||||| |||||| || || ||| | ||| ||||| | || || || Sbjct 1187 ATATTGGATGCTGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCC 1128 Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 |||||| | || || ||||| ||| | ||| ||||||||| ||| || ||| Sbjct 1127 TGTTCCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGTCTGATGGTTCGTTT 1068 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCT 50263 ||||| ||| |||| |||| |||| ||||||||| ||||| ||| Sbjct 1067 CTTGAGGATCATCACTTTGAGAAAGGTTATGTCTTGACTTGTGTGGCT 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558875419748800