Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq10676 87.8 3e-15 seq10675 78.8 2e-12 >seq10676 Length=153368 Score = 87.8 bits (96), Expect = 3e-15 Identities = 207/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | || | Sbjct 104156 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCTGGGGCTC 104215 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 104216 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 104274 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 104275 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 104330 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| | | || |||| ||||| ||| | | |||| Sbjct 104331 GGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 104390 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||||| | ||||||| | | || ||||||||||| ||| Sbjct 104391 GGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 104450 Query 312 AATCAAAC 319 | || ||| Sbjct 104451 ACTCGAAC 104458 Score = 87.8 bits (96), Expect = 3e-15 Identities = 207/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | || | Sbjct 132383 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCTGGGGCTC 132324 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 132323 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 132265 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 132264 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 132209 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| | | || |||| ||||| ||| | | |||| Sbjct 132208 GGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 132149 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||||| | ||||||| | | || ||||||||||| ||| Sbjct 132148 GGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 132089 Query 312 AATCAAAC 319 | || ||| Sbjct 132088 ACTCGAAC 132081 >seq10675 Length=258426 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 141219 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 141160 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 141159 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 141100 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 141099 AACCAAGATCGGATATAGCTGGT 141077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972696143872