Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 389 6e-106 seq6 345 6e-93 seq4 322 7e-86 seq1484 199 6e-49 >seq2 Length=43799612 Score = 389 bits (430), Expect = 6e-106 Identities = 243/256 (95%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 8858559 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 8858502 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8858501 CTCGTTGAAGTCCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 8858442 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 8858441 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 8858383 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | Sbjct 8858382 CCCAGAACATCTAAGGGCATCACAGACCTGTAATTGCCTCAAACTTCCTTGGCCTAAACG 8858323 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 8858322 GCCATAGTCCCTCTAA 8858307 >seq6 Length=53636577 Score = 345 bits (382), Expect = 6e-93 Identities = 226/245 (92%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||| | Sbjct 6588719 GTACAAAGGGCAAGGACATAGTCAACGCGAGCT-GATGACTCGCGCTTACTAAGAATT-C 6588776 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6588777 TTCGTTGAAGACCAACAATTGCAATAATCTATCCCCATCACGATGAAATTTCAAAGATTA 6588836 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 6588837 CCCGGGCCTGTCGGCCAAGGCGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 6588895 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||| |||||||||||||||||||| | ||| |||| ||||||||| | Sbjct 6588896 CCCAGAACATCTAAGGACATCACAGACCTGTTATTGCTTTAAATTTCCTTGGCCTAAATG 6588955 Query 241 GCCAT 245 || || Sbjct 6588956 GCTAT 6588960 >seq4 Length=50002108 Score = 322 bits (356), Expect = 7e-86 Identities = 228/256 (89%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| |||| | Sbjct 27207710 GTACAAAGGGCAGGGACGTACTCAACGCTAGCTT-ATGACTCGCGCTTCTTAGAAATTCC 27207768 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 | |||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 27207769 C--GTTGAATACCAACAATTGTAATGATCTATCCCCATCACGATAAAATTTCAAAGATTA 27207826 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||| |||||| || | |||| |||||||||||||||||||||| |||||| Sbjct 27207827 CCCGGGCCTGTCAGCCAAGATGTGA-ACTCATTGAATACATCAGTGTAGCGCGTGTGCGG 27207885 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | Sbjct 27207886 CAGAGAACATCTAAGGGCATCACAGACCTATTATTGCCTCAAACTTCCTTGGCCTAAACG 27207945 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 27207946 GCCATATTCCCTCTAA 27207961 Score = 129 bits (142), Expect = 9e-28 Identities = 135/170 (79%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-TGATGACTCGCGCTTACTAGGAATTT 59 || |||||||||||| ||| ||||||||||||| ||||||||| |||||||||||| || Sbjct 20516901 GTCCAAAGGGCAGGGTCGTTGTCAACGCGAGCTGAGATGACTCG-GCTTACTAGGAA-TT 20516844 Query 60 CCTCGTTGAAGACCAACAATTGCA-ATGATCTATCCCCATCACGATGAAATTTCAAAGAT 118 |||||||||||| ||||||| | | |||| |||| | ||| ||||||||||||| ||| Sbjct 20516843 CCTCGTTGAAGAACAACAATCGGAGATGACCTAT-CAGATCGGGATGAAATTTCAACGAT 20516785 Query 119 TACCCGGACCTGTC--GGCCAAGGTGATAGACTCGTTGAATACATCAGTG 166 ||||||| | | | |||| ||||| ||||| || || | |||| Sbjct 20516784 GACCCGGAGTGGACAGGACCAATGTGATGAGTTCGTTAAAGACTTGAGTG 20516735 >seq1484 Length=6986 Score = 199 bits (220), Expect = 6e-49 Identities = 117/119 (98%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 4641 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 4698 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4699 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 4757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751922225340