Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-26 seq4783 120 6e-25 seq1618 113 8e-23 seq3691 107 4e-21 seq358 89.7 9e-16 >seq4 Length=50002108 Score = 123 bits (136), Expect = 5e-26 Identities = 99/118 (84%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||| | |||| || |||||||||||||||||||||||||| ||||| || Sbjct 27208471 AGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 27208412 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | | ||||||||| || |||||||||||||||||||||| ||||||||||| |||| Sbjct 27208411 CAAATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 27208355 Score = 107 bits (118), Expect = 4e-21 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 26945536 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 26945477 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 | |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 26945476 GTGATAAAATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 26945418 Query 191 TAATAGGGATAGTCGG 206 ||| ||||| |||||| Sbjct 26945417 TAACAGGGACAGTCGG 26945402 Score = 107 bits (118), Expect = 4e-21 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 27217272 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 27217213 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 27217212 GGGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 27217154 Query 191 TAATAGGGATAGTCGG 206 ||| | ||| |||||| Sbjct 27217153 TAACAAGGACAGTCGG 27217138 >seq4783 Length=3700 Score = 120 bits (132), Expect = 6e-25 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 226 TCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA 285 ||||||||||||||||||||||||| ||||| ||| ||||||||| | || |||||||| Sbjct 2647 TCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAATCATTTACCAAGGA 2588 Query 286 TGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||| ||||||||||| |||| Sbjct 2587 TGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 2556 >seq1618 Length=10285 Score = 113 bits (124), Expect = 8e-23 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 3965 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 4024 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 4025 GGGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 4083 Query 191 TAATAGGGATAGTCGG 206 ||| ||||| |||||| Sbjct 4084 TAACAGGGACAGTCGG 4099 >seq3691 Length=4515 Score = 107 bits (118), Expect = 4e-21 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| | ||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 4438 CTGTTACTTTGAAGAGATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 4379 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 4378 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 4320 Query 191 TAATAGGGATAGTCGG 206 ||| ||||| |||||| Sbjct 4319 TAACAGGGACAGTCGG 4304 >seq358 Length=52776 Score = 89.7 bits (98), Expect = 9e-16 Identities = 172/245 (70%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAA 134 || |||||| |||||| |||| ||||| || || | ||| | ||| ||||| |||| | Sbjct 10418 TAATTTGAAGAAATTATAGTGCTCAAATCAAGCATACACTCTGTATATATTAGTATGGTA 10477 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-GTAATGATTAA 193 ||| | |||||| | || | |||| |||| | || || | ||||||||||| Sbjct 10478 TAACATTATAGGATTT-CGATCATATTGTGTTAGCA-CTCGGTATGAGAGTAATGATTAA 10535 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 || ||| ||| | | | |||| || |||| | |||||||||||| ||||| | Sbjct 10536 TATGGACAGTTAAGAGCATTCATATTTCATAGTCAAACGTGAAATTCTTGTATTTAAGAA 10595 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATG-TTTTCATTAATCAGTGAACGAAAGT 312 ||| ||| ||||| || | || |||| ||| ||||||||||||| | ||| ||| | Sbjct 10596 AGATGAACCACTGC--AAACATTTGCCAAATATGTTTTTCATTAATCAAT-AACAAAATT 10652 Query 313 TAGGG 317 | ||| Sbjct 10653 TGGGG 10657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915102293248