Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3 226 1e-56 seq4 205 4e-50 seq51 149 3e-33 seq1 149 3e-33 seq8 125 3e-26 seq9 98.7 4e-18 >seq3 Length=29132933 Score = 226 bits (250), Expect = 1e-56 Identities = 222/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 10451909 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 10451968 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || | ||| ||| |||||||| | |||| Sbjct 10451969 AACCCGTAAGGCGCAAGGAAGCTGATTGG---TAGGATCCCTCACGGGTGCACTACCGAC 10452025 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 10452026 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 10452085 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 10452086 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 10452145 Query 643 CTGGCGTGCAAA-TCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||||| ||| ||||| | |||||||||||||||| Sbjct 10452146 CTGACGTGCAAAGTCGTTCGTCTGACTTGGGTATAGGGGCGA 10452187 Score = 161 bits (178), Expect = 4e-37 Identities = 133/162 (82%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 38 ACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAA 97 |||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||| Sbjct 10451526 ACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAA 10451585 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| ||| |||||||||||||| ||||||| | || |||||||||||| |||||| Sbjct 10451586 ATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTTTGA 10451645 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 10451646 AAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 10451687 >seq4 Length=50002108 Score = 205 bits (226), Expect = 4e-50 Identities = 214/278 (77%), Gaps = 5/278 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |||| Sbjct 27206288 CCCGTCTTGAAACACGGACCAAGGAGTCTGACATTTGTGCGAGTCAACGGGTGAGTAAAC 27206229 Query 467 CCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 |||| | || || ||| ||| | | ||| ||| |||||| | ||| ||| Sbjct 27206228 CCGTAAGGCGCAAGGAAGCTGATTTG---TAGGATCCCTCATTTGTGCACTACCGAACGA 27206172 Query 526 TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 | |||| | | || || ||||||| |||||| |||| |||||||| ||||||||| Sbjct 27206171 CCTTGATCTTCTGAGAAGGGTTTGAGTGTGAGCATGCCTGTCGGGACCCGGAAGATGGTG 27206112 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | ||| Sbjct 27206111 AACTATGCCTGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTG 27206052 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||| |||| | |||||||||||||||| Sbjct 27206051 ACGTTCAAATCGTCCGTCTGACTTGGGTATAGGGGCGA 27206014 Score = 114 bits (126), Expect = 5e-23 Identities = 123/165 (75%), Gaps = 12/165 (7%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||| ||| | || ||| |||||||| | || | ||| Sbjct 27206665 TCTACGAGTCGGGTTGTTTGGGAATGTAGCCCCAATCGGGCGGTAAATTCCGTCCACAGC 27206606 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||| Sbjct 27206605 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACTGCGAGGTAAAGATGA--------- 27206555 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||| ||| || ||||||||| | ||||||||| Sbjct 27206554 ---AAAGAGAGTCAAAGAGTGTTTGAAATTGTCGGGAGGGAAGCG 27206513 >seq51 Length=258232 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||| |||||||||||||| | || ||| || ||||| | || || || Sbjct 85766 TCTACGAGTCAGGTTTTTTGGGAATGCAGCCCCAATCGGGCGGCAAATTCCGTCCAAGGC 85825 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 85826 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 85885 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 85886 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 85930 >seq1 Length=26309735 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||||||||||||||||| | || ||| |||||||| | || || || Sbjct 10020843 TCTACGAGTCTGGTTGTTTGGGAATGCAGTCCCAATCGGGCGGTAAATTCCGTCCAAGGC 10020784 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||| ||||||| ||||||| | || |||||||||||| |||| Sbjct 10020783 TAAATATGGGCGAGAGACTGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 10020724 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 10020723 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 10020679 >seq8 Length=29681327 Score = 125 bits (138), Expect = 3e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | || Sbjct 17896062 GAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACT 17896121 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| ||||| | |||||||||||||||| Sbjct 17896122 GACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 17896160 >seq9 Length=38354807 Score = 98.7 bits (108), Expect = 4e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| ||||||||||| |||||| | || || |||||||| | || || || Sbjct 11755961 TCTACGAGTCGGGTTGTTTGGGATTGCAGCCCCAATCGGACGGTAAATTCCGTCCAAGGC 11756020 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 ||||||| ||| |||||||||||||| ||||||| Sbjct 11756021 TAAATATGGGCGAGAGACCGATAGCGAACAAGTA 11756054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079770999800