Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29]
10,676 sequences; 426,614,037 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq10676 230 6e-58
seq10675 187 6e-45
seq8 187 6e-45
seq183 84.2 6e-14
>seq10676
Length=153368
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 100402 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 100461
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 100462 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 100521
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 100522 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 100581
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 100582 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 100641
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 100642 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 100701
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 100702 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 100761
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 100762 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 100810
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 136137 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 136078
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 136077 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 136018
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 136017 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 135958
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 135957 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 135898
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 135897 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 135838
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 135837 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 135778
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 135777 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 135729
>seq10675
Length=258426
Score = 187 bits (206), Expect = 6e-45
Identities = 245/335 (73%), Gaps = 12/335 (4%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 118920 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 118861
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123
|| ||||||| ||| ||||||||| | || |||||||| | || || || ||
Sbjct 118860 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTT-GAAAG---TG 118805
Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||| | | | || ||| | | ||| || | || | ||| ||||| | ||||
Sbjct 118804 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 118748
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||||| | ||| || ||||||| ||| | | |||||| |||| |
Sbjct 118747 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 118688
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||||||||| | ||||| || |||||| || ||||||| |||||||| ||| |
Sbjct 118687 CGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGG 118628
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||||||||||||| ||| ||||||||
Sbjct 118627 GATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 118593
>seq8
Length=29681327
Score = 187 bits (206), Expect = 6e-45
Identities = 245/335 (73%), Gaps = 12/335 (4%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 25884606 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 25884547
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123
|| ||||||| ||| ||||||||| | || |||||||| | || || || ||
Sbjct 25884546 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTT-GAAAG---TG 25884491
Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||| | | | || ||| | | ||| || | || | ||| ||||| | ||||
Sbjct 25884490 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 25884434
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||||| | ||| || ||||||| ||| | | |||||| |||| |
Sbjct 25884433 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 25884374
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||||||||| | ||||| || |||||| || ||||||| |||||||| ||| |
Sbjct 25884373 CGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGG 25884314
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||||||||||||| ||| ||||||||
Sbjct 25884313 GATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 25884279
>seq183
Length=99711
Score = 84.2 bits (92), Expect = 6e-14
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 229 AGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCG 288
|||||| |||| ||||||||||| | |||| || |||||| || |||||||
Sbjct 52315 AGGAACGCCAAAAGCGAAGGCAGCTCTTTGGGTCTCTACCGACGCTGGTGTGCGAAAGCA 52374
Query 289 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||| ||| ||| | |||||||||||||||||||| ||| |||| |||
Sbjct 52375 TGGGAAGCGAACGAGGTTAGATACCCTGGTAGTCCATGCCGTAAATGAT 52423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289462322304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |