Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq10675 149 9e-34 seq10676 141 1e-31 seq387 73.4 5e-11 >seq10675 Length=258426 Score = 149 bits (164), Expect = 9e-34 Identities = 179/241 (74%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 139860 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 139918 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 139919 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 139975 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 139976 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 140027 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 140028 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 140087 Query 248 A 248 | Sbjct 140088 A 140088 >seq10676 Length=153368 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 105513 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 105455 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 105454 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 105408 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 105407 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 105354 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 105353 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 105294 Query 246 GTA 248 ||| Sbjct 105293 GTA 105291 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 131026 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 131084 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 131085 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 131131 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 131132 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 131185 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 131186 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 131245 Query 246 GTA 248 ||| Sbjct 131246 GTA 131248 >seq387 Length=47239 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 30357 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 30299 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||| ||||||| Sbjct 30298 TGTGTTTTTGGTAAGCAGTCGC 30277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694328182548