Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq10676 87.8 2e-15 seq10675 87.8 2e-15 seq387 80.6 3e-13 seq168 73.4 4e-11 >seq10676 Length=153368 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 105412 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 105471 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 105472 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 105517 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 131127 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 131068 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 131067 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 131022 >seq10675 Length=258426 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 139951 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 139892 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 139891 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 139854 >seq387 Length=47239 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108 ||| || |||||||| ||||||| ||| |||||||||| ||| ||||| || || Sbjct 30258 TCGCAGTGACCAGGCCCGGGCGACTGCTTACCAAAAACACAGGTCTCCGCAAAGTCGTAA 30317 Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | | |||| ||| |||||||||||| |||||||||||| || Sbjct 30318 GACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 30361 >seq168 Length=91649 Score = 73.4 bits (80), Expect = 4e-11 Identities = 80/105 (76%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 49 TCGAAGATACCAGGCCGCTGCGACTG-TTTATTAAAAACACAGCACTCTGCAAACACGAA 107 ||| || |||||||| ||||||| |||| |||||||||| ||| ||||| || | Sbjct 61344 TCGCAGTGACCAGGCCCGGGCGACTGCTTTACCAAAAACACAGGTCTCCGCAAAGTCGTA 61285 Query 108 AGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || | |||| ||| |||||||||||| ||||| |||||| || Sbjct 61284 AGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCAGAAGGTCAA 61240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476750687556